Evidence map›Paper›PMID 27240196›Full record

ArticleNature biotechnology2016

A bright cyan-excitable orange fluorescent protein facilitates dual-emission microscopy and enhances bioluminescence imaging in vivo.

Jun Chu, Younghee Oh, Alex Sens, Niloufar Ataie, Hod Dana, John J Macklin, Tal Laviv, Erik S Welf, Kevin M Dean, Feijie Zhang and 11 more

Abstract read
In one paragraph

Article in Nature biotechnology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 161 papers.

0numbers the graph read from it
0cells of the map it votes in
161citing papers in PubMed
46.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

161 citing papers in PubMed, 310 citations in OpenAlex.

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  18. Tumor-targeting bioluminescent bacteria forEngineering microbiology · 2025
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101 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 6 institutions in 1 country.

Jun ChuDepartment of Bioengineering, Stanford University, Stanford, California, USA.
Younghee OhDepartment of Bioengineering, Stanford University, Stanford, California, USA.
Alex SensDepartment of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii, USA.
Niloufar AtaieDepartment of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii, USA.
Hod DanaHoward Hughes Medical Institute, Janelia Research Campus, Ashburn, Virginia, USA.
John J MacklinHoward Hughes Medical Institute, Janelia Research Campus, Ashburn, Virginia, USA.
Tal LavivMax Planck Florida Institute, Jupiter, Florida, USA.
Erik S WelfDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Kevin M DeanDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Feijie ZhangDepartment of Pediatrics, Stanford University, Stanford, California, USA.
Benjamin B KimDepartment of Bioengineering, Stanford University, Stanford, California, USA.
Clement Tran TangDepartment of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii, USA.
Michelle HuDepartment of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii, USA.
Michelle A BairdDepartment of Biological Science, Florida State University, Tallahassee, Florida, USA.
Michael W DavidsonDepartment of Biological Science, Florida State University, Tallahassee, Florida, USA.
Mark A KayDepartment of Pediatrics, Stanford University, Stanford, California, USA.
Reto FiolkaDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Ryohei YasudaMax Planck Florida Institute, Jupiter, Florida, USA.
Douglas S KimHoward Hughes Medical Institute, Janelia Research Campus, Ashburn, Virginia, USA.
Ho-Leung NgDepartment of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii, USA.ORCID 0000-0002-6415-1938
Michael Z LinDepartment of Bioengineering, Stanford University, Stanford, California, USA.
Stanford University · USUniversity of Hawaiʻi at Mānoa · USHoward Hughes Medical Institute · USThe University of Texas Southwestern Medical Center · USFlorida State University · USMax Planck Florida Institute for Neuroscience · US

Funding

HEPATIC GENE TRANSFER FOR TREATMENT OF HEMOPHILIAS A &BR01HL064274 · NHLBI · STANFORD UNIVERSITY · PI Mark A Kay · 2000 to 2026
$13.6M
TRAINING & OUTREACH COREP50GM107615 · NIGMS · STANFORD UNIVERSITY · PI SCOTT, MATTHEW P. · 2013 to 2017
$10.9M
Mechanisms of Ras Signaling in Single SynapsesR01MH080047 · NIMH · MAX PLANCK FLORIDA CORPORATION · PI YASUDA, RYOHEI · 2007 to 2023
$6.8M
Protein voltage sensors: kilohertz imaging of neural dynamics in behaving animalsU01NS090600 · NINDS · STANFORD UNIVERSITY · PI LIN, MICHAEL Z., SCHNITZER, MARK J · 2014 to 2016
$2.8M
MINOS (Macromolecular Insights on Nucleic acids Optimized by Scattering)R01GM105404 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI TAINER, JOHN A. · 2012 to 2015
$2.1M
Symmetry breaking and polarization of cell in 3D environmentsF32GM117793 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI DEAN, KEVIN MICHAEL · 2016 to 2017
$121k
NHLBI NIH HHS R01 HL064274NIGMS NIH HHS F32 GM117793NIGMS NIH HHS P50 GM107615NIGMS NIH HHS R01 GM105404NIMH NIH HHS R01 MH080047NINDS NIH HHS U01 NS090600
6 · The paper itself

Abstract

Orange-red fluorescent proteins (FPs) are widely used in biomedical research for multiplexed epifluorescence microscopy with GFP-based probes, but their different excitation requirements make multiplexing with new advanced microscopy methods difficult. Separately, orange-red FPs are useful for deep-tissue imaging in mammals owing to the relative tissue transmissibility of orange-red light, but their dependence on illumination limits their sensitivity as reporters in deep tissues. Here we describe CyOFP1, a bright, engineered, orange-red FP that is excitable by cyan light. We show that CyOFP1 enables single-excitation multiplexed imaging with GFP-based probes in single-photon and two-photon microscopy, including time-lapse imaging in light-sheet systems. CyOFP1 also serves as an efficient acceptor for resonance energy transfer from the highly catalytic blue-emitting luciferase NanoLuc. An optimized fusion of CyOFP1 and NanoLuc, called Antares, functions as a highly sensitive bioluminescent reporter in vivo, producing substantially brighter signals from deep tissues than firefly luciferase and other bioluminescent proteins.

Indexed as

Fluorescent DyesLightingLuminescent MeasurementsLuminescent ProteinsMicroscopy, Fluorescence, MultiphotonMolecular ImagingStaining and LabelingFluorescent DyesLuminescent Proteins

Identifiers

PMID27240196
PMCPMC4942401
OpenAlexW2415046030

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.