Evidence map›Paper›PMID 27239477›Full record

ArticleBioMed research international2016

Isolation and Characterization of a Broad Spectrum Bacteriocin from Bacillus amyloliquefaciens RX7.

Kong Boon Lim, Marilen P Balolong, Sang Hoon Kim, Ju Kyoung Oh, Ji Yoon Lee, Dae-Kyung Kang

Open access · hybridAbstract read
In one paragraph

Article in BioMed research international, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 52 citations in OpenAlex.

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  9. Characterization of the Novel Leaderless Bacteriocin, Bawcin, fromInternational journal of molecular sciences · 2023
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  13. Genomic analysis ofMolecular biology research communications · 2022
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  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Isolation and Characterization of an Anti-listerial Bacteriocin fromKorean journal for food science of animal resources · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Kong Boon LimDepartment of Animal Resources Science, Dankook University, Cheonan 31116, Republic of Korea.ORCID 0000-0003-3105-5533
Marilen P BalolongDepartment of Animal Resources Science, Dankook University, Cheonan 31116, Republic of Korea.ORCID 0000-0002-3899-5125
Sang Hoon KimDepartment of Animal Resources Science, Dankook University, Cheonan 31116, Republic of Korea.
Ju Kyoung OhDepartment of Animal Resources Science, Dankook University, Cheonan 31116, Republic of Korea.ORCID 0000-0002-8554-1863
Ji Yoon LeeNational Instrumentation Center for Environmental Management, Seoul National University, Seoul 08826, Republic of Korea.
Dae-Kyung KangDepartment of Animal Resources Science, Dankook University, Cheonan 31116, Republic of Korea.ORCID 0000-0001-9241-1250
Dankook University · KRSeoul National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We isolated a Bacillus strain, RX7, with inhibitory activity against Listeria monocytogenes from soil and identified it as Bacillus amyloliquefaciens based on 16S rRNA gene sequencing. The inhibitory activity was stable over a wide range of pH and was fully retained after 30 min at 80°C, after which it decreased gradually at higher temperatures. The activity was sensitive to the proteolytic action of α-chymotrypsin, proteinase-K, and trypsin, indicating its proteinaceous nature. This bacteriocin was active against a broad spectrum of bacteria and the fungus Candida albicans. Direct detection of antimicrobial activity on a sodium dodecyl sulfate-polyacrylamide gel suggested an apparent molecular mass of approximately 5 kDa. Ammonium sulfate precipitation and anion-exchange and gel permeation chromatography integrated with reverse phase-high-performance liquid chromatography were used for bacteriocin purification. Automated N-terminal Edman degradation of the purified RX7 bacteriocin recognized the first 15 amino acids as NH2-X-Ala-Trp-Tyr-Asp-Ile-Arg-Lys-Leu-Gly-Asn-Lys-Gly-Ala, where the letter X in the sequence indicates an unknown or nonstandard amino acid. Based on BLAST similarity search and multiple alignment analysis, the obtained partial sequence showed high homology with the two-peptide lantibiotic haloduracin (HalA1) from Bacillus halodurans, although at least two amino acids differed between the sequences. A time-kill study demonstrated a bactericidal mode of action of RX7 bacteriocin.

Indexed as

Anti-Infective AgentsBacillus amyloliquefaciensBacteriocinsCandida albicansHydrogen-Ion ConcentrationListeria monocytogenesMolecular WeightProteolysisRNA, Ribosomal, 16SSoil MicrobiologyTemperatureAnti-Infective AgentsBacteriocinsRNA, Ribosomal, 16S

Identifiers

PMID27239477
PMCPMC4864540
OpenAlexW2344633886

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.