Evidence map›Paper›PMID 27239460›Full record

ArticleOcular oncology and pathology2016

Investigation of Somatic GNAQ, GNA11, BAP1 and SF3B1 Mutations in Ophthalmic Melanocytomas.

Jasmine H Francis, Thomas Wiesner, Tatyana Milman, Helen H Won, Amy Lin, Vivian Lee, Daniel M Albert, Robert Folberg, Michael F Berger, Devron H Char and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Ocular oncology and pathology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Uveal Melanocytoma without GNAQ/GNA11 Mutations.Ocular oncology and pathology · 2025
    Article
  3. Review
  4. Review
  5. Article
  6. BRAF, NRAS, and GNAQ Mutations in Conjunctival Melanocytic Nevi.Investigative ophthalmology & visual science · 2018
    Article
  7. Review
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 1 country.

Jasmine H FrancisMemorial Sloan-Kettering Cancer Center, New York, N.Y., USA.
Thomas WiesnerMemorial Sloan-Kettering Cancer Center, New York, N.Y., USA.
Tatyana MilmanNew York Eye and Ear Infirmary, New York, N.Y., USA.
Helen H WonMemorial Sloan-Kettering Cancer Center, New York, N.Y., USA.
Amy LinUniversity of Illinois Hospital and Health Sciences System, Chicago, Ill., USA.
Vivian LeeScheie Eye Institute, University of Pennsylvania, Philadelphia, Pa., USA.
Daniel M AlbertMcPherson Eye Research Institute, University of Wisconsin-Madison, Madison, Wis., USA.
Robert FolbergOakland University William Beaumont School of Medicine, Rochester, Mich., USA.
Michael F BergerMemorial Sloan-Kettering Cancer Center, New York, N.Y., USA.
Devron H CharCalifornia Pacific Medical Center, San Francisco, Calif., USA.
Brian MarrMemorial Sloan-Kettering Cancer Center, New York, N.Y., USA.
David H AbramsonMemorial Sloan-Kettering Cancer Center, New York, N.Y., USA.
Memorial Sloan Kettering Cancer Center · USCalifornia Pacific Medical Center · USNew York Eye and Ear Infirmary · USOakland University · USUniversity of Illinois Hospital & Health Sciences System · USUniversity of Pennsylvania · USUniversity of Wisconsin–Madison · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
UW Vision Research Core - Administrative CoreP30EY016665 · NEI · UNIVERSITY OF WISCONSIN-MADISON · PI Donna M Peters · 2005 to 2026
$12.6M
The Role of Src-Family Tyrosine Kinases and Srcasm in Ocular Surface Epithelial Wound Repair and NeoplasiaK08EY025742 · NEI · UNIVERSITY OF PENNSYLVANIA · PI LEE, VIVIAN · 2015 to 2019
$1.1M
NCI NIH HHS P30 CA008748NEI NIH HHS K08 EY025742NEI NIH HHS P30 EY016665
6 · The paper itself

Abstract

purposeThe aim of this study was to use massively parallel DNA sequencing to identify GNAQ/11, BAP1 and SF3B1 mutations in ophthalmic melanocytoma. PROCEDURES: Six ophthalmic melanocytoma specimens (1 iridociliary and 5 optic nerve) were profiled for genomic alterations in GNAQ/11, BAP1 and SF3B1 using a custom deep sequencing assay. This assay uses solution phase hybridization-based exon capture and deep-coverage massively parallel DNA sequencing to interrogate all protein-coding exons and select introns.

resultsThe only iridociliary melanocytoma showed a mutation in GNAQ but not in BAP1. Of the 2 optic-nerve melanocytomas that developed into melanoma, one had a GNAQ mutation and both a BAP1 mutation and monosomy 3. The remaining 3 optic-nerve melanocytomas did not reveal mutations in GNAQ/11 or BAP1. SF3B1 mutations were not detected in any specimen.

conclusionsThe presence of GNAQ mutation in some iridociliary and optic-nerve melanocytomas suggests a possible relationship between ophthalmic melanocytoma and other ophthalmic melanocytic neoplasms. BAP1 mutation may accompany the transformation of ophthalmic melanocytoma to melanoma.

Indexed as

BAP1GeneticsGNAQ/11MelanocytomaMelanomaOcular tumorsSF3B1

Identifiers

PMID27239460
PMCPMC4881266
OpenAlexW2327054228

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.