Evidence map›Paper›PMID 27238970›Full record

ArticleStructure (London, England : 1993)2016

An Engineered Switch in T Cell Receptor Specificity Leads to an Unusual but Functional Binding Geometry.

Daniel T Harris, Nishant K Singh, Qi Cai, Sheena N Smith, Craig Vander Kooi, Erik Procko, David M Kranz, Brian M Baker

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Strategies and rules for tuning TCR-derived therapy.Expert reviews in molecular medicine · 2023
    Review
  5. Article
  6. Review
  7. Engineering Proteins by Combining Deep Mutational Scanning and Yeast Display.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Structure-guided engineering of the affinity and specificity of CARs against Tn-glycopeptides.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  14. Article
  15. T-cell Receptors EngineeredCancer immunology research · 2019
    Article
  16. Improving T Cell Receptor On-Target Specificity via Structure-Guided Design.Molecular therapy : the journal of the American Society of Gene Therapy · 2019
    Article
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Daniel T Harris *Department of Biochemistry, University of Illinois, 600 S. Matthews Ave., Urbana, IL 61801, USA.
Nishant K Singh *Department of Chemistry and Biochemistry and the Harper Cancer Research Institute, University of Notre Dame, 1234 Notre Dame Avenue, South Bend, IN 46557, USA.
Qi CaiDepartment of Biochemistry, University of Illinois, 600 S. Matthews Ave., Urbana, IL 61801, USA.
Sheena N SmithDepartment of Biochemistry, University of Illinois, 600 S. Matthews Ave., Urbana, IL 61801, USA.
Craig Vander KooiDepartment of Molecular and Cellular Biochemistry, University of Kentucky, Lexington, KY 40506, USA.
Erik ProckoDepartment of Biochemistry, University of Illinois, 600 S. Matthews Ave., Urbana, IL 61801, USA.
David M KranzDepartment of Biochemistry, University of Illinois, 600 S. Matthews Ave., Urbana, IL 61801, USA.
Brian M BakerDepartment of Chemistry and Biochemistry and the Harper Cancer Research Institute, University of Notre Dame, 1234 Notre Dame Avenue, South Bend, IN 46557, USA.

Funding

Structural biophysics and molecular design in cellular immunityR35GM118166 · NIGMS · UNIVERSITY OF NOTRE DAME · PI BAKER, BRIAN M · 2016 to 2025
$4.4M
Physical Basis for T Cell Receptor Binding and ActivityR01GM067079 · NIGMS · UNIVERSITY OF NOTRE DAME · PI BAKER, BRIAN M · 2003 to 2015
$3.5M
Engineering T Cell Receptors for Adoptive Cell TherapiesR01CA178844 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI KRANZ, DAVID M. · 2014 to 2018
$1.6M
Engineering High-Affinity T Cell Receptors Against Cancer AntigensF30CA180723 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI HARRIS, DANIEL · 2013 to 2018
$275k
NCI NIH HHS F30 CA180723NCI NIH HHS R01 CA178844NIGMS NIH HHS R01 GM067079NIGMS NIH HHS R35 GM118166
6 · The paper itself

Abstract

Utilizing a diverse binding site, T cell receptors (TCRs) specifically recognize a composite ligand comprised of a foreign peptide and a major histocompatibility complex protein (MHC). To help understand the determinants of TCR specificity, we studied a parental and engineered receptor whose peptide specificity had been switched via molecular evolution. Altered specificity was associated with a significant change in TCR-binding geometry, but this did not impact the ability of the TCR to signal in an antigen-specific manner. The determinants of binding and specificity were distributed among contact and non-contact residues in germline and hypervariable loops, and included disruption of key TCR-MHC interactions that bias αβ TCRs toward particular binding modes. Sequence-fitness landscapes identified additional mutations that further enhanced specificity. Our results demonstrate that TCR specificity arises from the distributed action of numerous sites throughout the interface, with significant implications for engineering therapeutic TCRs with novel and functional recognition properties.

Indexed as

MutationAnimalsBinding Sites, AntibodyHLA-A2 AntigenHumansMiceMolecular Docking SimulationProtein BindingReceptors, Antigen, T-CellHLA-A2 AntigenReceptors, Antigen, T-Cell

Identifiers

PMID27238970
PMCPMC4938795

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.