Evidence map›Paper›PMID 27238967›Full record

ArticleStructure (London, England : 1993)2016

Dissecting Dynamic Allosteric Pathways Using Chemically Related Small-Molecule Activators.

George P Lisi, Gregory A Manley, Heidi Hendrickson, Ivan Rivalta, Victor S Batista, J Patrick Loria

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Facilitating NMR Resonance Assignment with Metabolic Tampering.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
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  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Community Network Analysis of Allosteric Proteins.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Chemical Exchange.Methods in enzymology · 2019
    Article
  18. Eigenvector centrality for characterization of protein allosteric pathways.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  19. Article
  20. Engineered control of enzyme structural dynamics and function.Protein science : a publication of the Protein Society · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

George P LisiDepartment of Chemistry, Yale University, New Haven, CT 06520, USA.
Gregory A ManleyDepartment of Chemistry, Yale University, New Haven, CT 06520, USA.
Heidi HendricksonDepartment of Chemistry, Yale University, New Haven, CT 06520, USA.
Ivan RivaltaÉcole Normale Supérieure de Lyon, CNRS, Université Lyon 1, Laboratoire de Chimie UMR 5182, 46, Allée d'Italie, 69364 Lyon Cedex 07, France.
Victor S BatistaDepartment of Chemistry, Yale University, New Haven, CT 06520, USA. Electronic address: victor.batista@yale.edu.
J Patrick LoriaDepartment of Chemistry, Yale University, New Haven, CT 06520, USA; Department of Molecular Biophysics & Biochemistry, Yale University, New Haven, CT 06520, USA. Electronic address: patrick.loria@yale.edu.

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
PREDOCTORAL PROGRAM IN BIOPHYSICST32GM008283 · NIGMS · YALE UNIVERSITY · PI XIONG, YONG · 1988 to 2022
$10.5M
Computational and Biochemical Studies of Temperature Effects on Allostery in the Imidazole Glycerol Phosphate Synthase (IGPS) from T. maritimaR01GM106121 · NIGMS · YALE UNIVERSITY · PI BATISTA, VICTOR S, LORIA, JOSEPH P · 2014 to 2021
$2.3M
NCATS NIH HHS UL1 TR001863NIGMS NIH HHS R01 GM106121NIGMS NIH HHS T32 GM008283
6 · The paper itself

Abstract

The allosteric mechanism of the heterodimeric enzyme imidazole glycerol phosphate synthase was studied in detail with solution nuclear magnetic resonance spectroscopy and molecular dynamics simulations. We studied IGPS in complex with a series of allosteric activators corresponding to a large range of catalytic rate enhancements (26- to 4,900-fold), in which ligand binding is entropically driven. Conformational flexibility on the millisecond timescale plays a crucial role in intersubunit communication. Carr-Purcell-Meiboom-Gill relaxation dispersion experiments probing Ile, Leu, and Val methyl groups reveal that the apo- and glutamine-mimicked complexes are static on the millisecond timescale. Domain-wide motions are stimulated in the presence of the allosteric activators. These studies, in conjunction with ligand titrations, demonstrate that the allosteric network is widely dispersed and varies with the identity of the effector. Furthermore, we find that stronger allosteric ligands create more conformational flexibility on the millisecond timescale throughout HisF. This domain-wide loosening leads to maximum catalytic activity.

Indexed as

Allosteric SiteAllosteric RegulationAminohydrolasesAminoimidazole CarboxamideIsoxazolesLigandsMolecular Docking SimulationRibonucleotidesacivicinAICA ribonucleotideAminohydrolasesAminoimidazole Carboxamideimidazole glycerol phosphate synthaseIsoxazolesLigandsRibonucleotides

Identifiers

PMID27238967
PMCPMC4938718

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.