Evidence map›Paper›PMID 27236849›Full record

ArticleBiologicals : journal of the International Association of Biological Standardization2016

Rhabdovirus-like endogenous viral elements in the genome of Spodoptera frugiperda insect cells are actively transcribed: Implications for adventitious virus detection.

Christoph Geisler, Donald L Jarvis

Open access · greenAbstract read
In one paragraph

Article in Biologicals : journal of the International Association of Biological Standardization, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 43 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Christoph GeislerGlycoBac LLC, 1938 Harney Street, Laramie, WY 82072, USA. Electronic address: christophgeisler@gmail.com.
Donald L JarvisGlycoBac LLC, 1938 Harney Street, Laramie, WY 82072, USA; University of Wyoming, Department of Molecular Biology, 1000 E. University Avenue, Laramie, WY 82071, USA.
University of Wyoming · US

Funding

Glycoengineered insect cells for commercial biologics manufacturingR44GM102982 · NIGMS · GLYCOBAC, LLC · PI BLAIR, CAROL D, JARVIS, DONALD L. · 2016 to 2017
$940k
Glycoengineering insect cells for commercial recombinant glycoprotein productionR43GM102982 · NIGMS · GLYCOBAC, LLC · PI GEISLER, CHRISTOPH, JARVIS, DONALD L. · 2013 to 2014
$599k
Glycoengineered baculoviruses for the production of more efficacious influenza vaR43AI112118 · NIAID · GLYCOBAC, LLC · PI MAGHODIA, AJAYKUMAR B. · 2014 to 2014
$225k
NIAID NIH HHS R43 AI112118NIGMS NIH HHS R43 GM102982NIGMS NIH HHS R44 GM102982
6 · The paper itself

Abstract

Spodoptera frugiperda (Sf) cell lines are used to produce several biologicals for human and veterinary use. Recently, it was discovered that all tested Sf cell lines are persistently infected with Sf-rhabdovirus, a novel rhabdovirus. As part of an effort to search for other adventitious viruses, we searched the Sf cell genome and transcriptome for sequences related to Sf-rhabdovirus. To our surprise, we found intact Sf-rhabdovirus N- and P-like ORFs, and partial Sf-rhabdovirus G- and L-like ORFs. The transcribed and genomic sequences matched, indicating the transcripts were derived from the genomic sequences. These appear to be endogenous viral elements (EVEs), which result from the integration of partial viral genetic material into the host cell genome. It is theoretically impossible for the Sf-rhabdovirus-like EVEs to produce infectious virus particles as 1) they are disseminated across 4 genomic loci, 2) the G and L ORFs are incomplete, and 3) the M ORF is missing. Our finding of transcribed virus-like sequences in Sf cells underscores that MPS-based searches for adventitious viruses in cell substrates used to manufacture biologics should take into account both genomic and transcribed sequences to facilitate the identification of transcribed EVE's, and to avoid false positive detection of replication-competent adventitious viruses.

Indexed as

Transcription, GeneticAnimalsCell LineEndogenous RetrovirusesGene Expression Regulation, ViralGenes, ViralGenome, InsectOpen Reading FramesPhylogenyReverse Transcriptase Polymerase Chain ReactionRhabdoviridaeSpodopteraTranscriptomeViral ProteinsVirionVirusesViral ProteinsAdventitious virusBaculovirus insect cell systemEndogenous viral elementMassively parallel sequencingSf-rhabdovirusSpodoptera frugiperda cells

Identifiers

PMID27236849
PMCPMC4939140
OpenAlexW2404555666

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.