Evidence map›Paper›PMID 27234247›Full record

ArticleRice (New York, N.Y.)2012

Molecular mapping of the Pi2/9 allelic gene Pi2-2 conferring broad-spectrum resistance to Magnaporthe oryzae in the rice cultivar Jefferson.

Nan Jiang, Zhiqiang Li, Jun Wu, Yue Wang, Liqun Wu, Suhua Wang, Dan Wang, Ting Wen, Yi Liang, Pingyong Sun and 7 more

Open access · goldAbstract read
In one paragraph

Article in Rice (New York, N.Y.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 72 citations in OpenAlex.

  1. Pooled it
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  15. Characterization and mapping of Dt1 locus which co-segregates with CcTFL1 for growth habit in pigeonpea.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017
    Article
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  18. Functional divergence of duplicated genes results in a novel blast resistance gene Pi50 at the Pi2/9 locus.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 1 country.

Nan JiangHunan Provincial Key Laboratory of Crop Germplasm Innovation and Utilization, College of Agronomy, College of Bio-Safety Science and Technology, Hunan Agricultural University, Changsha, 410128, China.
Zhiqiang LiHunan Provincial Key Laboratory of Crop Germplasm Innovation and Utilization, College of Agronomy, College of Bio-Safety Science and Technology, Hunan Agricultural University, Changsha, 410128, China.
Jun WuHunan Provincial Key Laboratory of Crop Germplasm Innovation and Utilization, College of Agronomy, College of Bio-Safety Science and Technology, Hunan Agricultural University, Changsha, 410128, China.
Yue WangHunan Provincial Key Laboratory of Crop Germplasm Innovation and Utilization, College of Agronomy, College of Bio-Safety Science and Technology, Hunan Agricultural University, Changsha, 410128, China.
Liqun WuHunan Provincial Key Laboratory of Crop Germplasm Innovation and Utilization, College of Agronomy, College of Bio-Safety Science and Technology, Hunan Agricultural University, Changsha, 410128, China.
Suhua WangHunan Provincial Key Laboratory of Crop Germplasm Innovation and Utilization, College of Agronomy, College of Bio-Safety Science and Technology, Hunan Agricultural University, Changsha, 410128, China.
Dan WangHunan Provincial Key Laboratory of Crop Germplasm Innovation and Utilization, College of Agronomy, College of Bio-Safety Science and Technology, Hunan Agricultural University, Changsha, 410128, China.
Ting WenHunan Provincial Key Laboratory of Crop Germplasm Innovation and Utilization, College of Agronomy, College of Bio-Safety Science and Technology, Hunan Agricultural University, Changsha, 410128, China.
Yi LiangHunan Provincial Key Laboratory of Crop Germplasm Innovation and Utilization, College of Agronomy, College of Bio-Safety Science and Technology, Hunan Agricultural University, Changsha, 410128, China.
Pingyong SunHunan Provincial Key Laboratory of Crop Germplasm Innovation and Utilization, College of Agronomy, College of Bio-Safety Science and Technology, Hunan Agricultural University, Changsha, 410128, China.
Jinling LiuHunan Provincial Key Laboratory of Crop Germplasm Innovation and Utilization, College of Agronomy, College of Bio-Safety Science and Technology, Hunan Agricultural University, Changsha, 410128, China.
Liangying DaiHunan Provincial Key Laboratory of Crop Germplasm Innovation and Utilization, College of Agronomy, College of Bio-Safety Science and Technology, Hunan Agricultural University, Changsha, 410128, China.
Zhilong WangHunan Provincial Key Laboratory of Crop Germplasm Innovation and Utilization, College of Agronomy, College of Bio-Safety Science and Technology, Hunan Agricultural University, Changsha, 410128, China.
Chao WangState Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China.
Meizhong LuoState Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China.
Xionglun LiuHunan Provincial Key Laboratory of Crop Germplasm Innovation and Utilization, College of Agronomy, College of Bio-Safety Science and Technology, Hunan Agricultural University, Changsha, 410128, China. xionglun@yahoo.com.
Guo-Liang WangHunan Provincial Key Laboratory of Crop Germplasm Innovation and Utilization, College of Agronomy, College of Bio-Safety Science and Technology, Hunan Agricultural University, Changsha, 410128, China. wang.620@osu.edu.
Hunan Agricultural University · CNInstitute of Plant Protection · CNHuazhong Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundUtilization of broad-spectrum resistance (R) genes is an effective and economical strategy to control the fungal pathogen Magnaporthe oryzae, the causal agent of the rice blast disease. Among the cloned blast resistance genes, Pi9, Pi2 and Piz-t confer broad-spectrum resistance to diverse M. oryzae isolates and were isolated from the Pi2/9 locus on chromosome 6. Identification and isolation of additional R genes with different resistance spectra from this locus will provide novel genetic resources for better control of this important rice disease.

resultsIn this study, we identified a dominant R gene, Pi2-2, at the Pi2/9 locus from Jefferson, an elite U.S. rice cultivar, through genetic and physical mapping. Inoculation tests showed that Jefferson has different resistant specificities to M. oryzae isolates compared rice lines with the Pi9, Pi2 and Piz-t genes. Fine mapping delimited Pi2-2 to a 270-kb interval between the markers AP5659-3 and RM19817, and this interval contains three nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes in the Nipponbare genome. Five bacterial artificial chromosome (BAC) clones spanning the region were identified, and a BAC contig covering the Pi2-2 locus was constructed.

conclusionsWe identified a new allelic gene at the Pi2/9 locus and fine-mapped the gene within a 270-kb region. Our results provide essential information for the isolation of the Pi2-2 gene and tightly linked DNA markers for rice blast resistance breeding.

Indexed as

BAC clonesMappingPi2/9 locusResistance geneRice blast

Identifiers

PMID27234247
PMCPMC5520841
OpenAlexW2123848651

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.