Evidence map›Paper›PMID 27234246›Full record

ArticleRice (New York, N.Y.)2012

A WUSCHEL-related homeobox 3B gene, depilous (dep), confers glabrousness of rice leaves and glumes.

Rosalyn B Angeles-Shim, Kenji Asano, Tomonori Takashi, Junghyun Shim, Takeshi Kuroha, Madoka Ayano, Motoyuki Ashikari

Open access · goldAbstract read
In one paragraph

Article in Rice (New York, N.Y.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. AAoB PLANTS · 2022
    Article
  8. Molecular Mechanisms of Plant Trichome Development.Frontiers in plant science · 2022
    Review
  9. Article
  10. Article
  11. G3 (Bethesda, Md.) · 2019
    Article
  12. Article
  13. Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Rosalyn B Angeles-ShimBioscience and Biotechnology Center, Nagoya University, Chikusa, Nagoya, Aichi, 464-8601, Japan.
Kenji AsanoBioscience and Biotechnology Center, Nagoya University, Chikusa, Nagoya, Aichi, 464-8601, Japan.
Tomonori TakashiHonda Research Institute Japan, Kazusa-Kamatari, Kisarazu-shi, Chiba, 292-0818, Japan.
Junghyun ShimBioscience and Biotechnology Center, Nagoya University, Chikusa, Nagoya, Aichi, 464-8601, Japan.
Takeshi KurohaBioscience and Biotechnology Center, Nagoya University, Chikusa, Nagoya, Aichi, 464-8601, Japan.
Madoka AyanoBioscience and Biotechnology Center, Nagoya University, Chikusa, Nagoya, Aichi, 464-8601, Japan.
Motoyuki AshikariBioscience and Biotechnology Center, Nagoya University, Chikusa, Nagoya, Aichi, 464-8601, Japan. ashi@agr.nagoya-u.ac.jp.
Nagoya University · JPHonda (Japan) · JPInternational Rice Research Institute · PH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGlabrousness is an important agricultural trait for the practical breeding of rice. In this study, depilous (dep), the gene responsible for glabrous leaves and glumes of rice was identified by map-based cloning.

resultsThe dep gene encodes a WUSCHEL-related homeobox 3B that was fine-mapped to a 22-kb region on the short arm of chromosome 5 using progenies derived from crosses between Koshihikari (pubescent) and GLSL15, an Oryza glaberrima chromosome segment substitution line (glabrous). Complementation tests confirmed the conditioning of the glabrous phenotype by the dep gene. Phylogenetic analysis showed that dep groups with the WOX3 family of plant-specific homeobox transcription factors that are involved in regulating lateral organ development. Localization of dep in the nucleus indicates the function of the gene as a transcription factor. Spatial expression of the gene was observed in the base of young shoots, the leaf sheath, midrib, young roots and nodal structures.

conclusionThe identification and cloning of dep will not only provide basis for future research on the elucidation of the molecular mechanisms underlying trichome formation in rice but will also aid in breeding programs for the development of glabrous varieties.

Indexed as

depilousGlabrousGlumesLeavesRiceTrichomesWUSCHEL-related homeobox

Identifiers

PMID27234246
PMCPMC5520829
OpenAlexW2102907844

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.