Evidence map›Paper›PMID 27232938›Full record

ArticleThe Plant journal : for cell and molecular biology2016

Nucleotide polymorphism affecting FLC expression underpins heading date variation in horticultural brassicas.

Judith A Irwin, Eleni Soumpourou, Clare Lister, Jan-Dick Ligthart, Sue Kennedy, Caroline Dean

Open access · hybridAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
19.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 74 citations in OpenAlex.

  1. Review
  2. Article
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  8. Article
  9. A 215-bp indel at intron I of BoFLC2 affects flowering time in Brassica oleracea var. capitata during vernalization.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  10. Non-vernalization requirement in Chinese kale caused by loss of BoFLC and low expressions of its paralogs.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  11. Frontiers in plant science · 2022
    Article
  12. Article
  13. Article
  14. Article
  15. A Vernalization Response in a Winter Safflower (Frontiers in plant science · 2021
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  16. Article
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Judith A IrwinJohn Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Eleni SoumpourouJohn Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Clare ListerJohn Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Jan-Dick LigthartBejo Zaden B.V., Trambaan 1, 1749 CZ, Warmenhuizen, the Netherlands.
Sue KennedyElsoms Seeds Ltd, Pinchbeck Road, Spalding, PE11 1QG, UK.
Caroline DeanJohn Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK. caroline.dean@jic.ac.uk.
John Innes Centre · GBBejo Zaden (Netherlands) · NLElsoms (United Kingdom) · GBNorwich Research Park · GB

Funding

Biotechnology and Biological Sciences Research Council BB/C517633/1Biotechnology and Biological Sciences Research Council BB/H004602/1Biotechnology and Biological Sciences Research Council BBS/E/J/000C0625
6 · The paper itself

Abstract

Variation in flowering time and response to overwintering has been exploited to breed brassica vegetables that can be harvested year-round. Our knowledge of flowering time control now enables the investigation of the molecular basis of this important variation. Here, we show that a major determinant of heading date variation in Brassica oleracea is from variation in vernalization response through allelic variation at FLOWERING LOCUS C.C2 (BoFLC4). We characterize two alleles of BoFLC.C2 that are both functional and confer a requirement for vernalization, but they show distinct expression dynamics in response to cold. Complementation experiments in Arabidopsis thaliana revealed that the allelic variation results from cis polymorphism at BoFLC.C2, which quantitatively influences the degree of cold-induced epigenetic silencing. This results in one allelic variant conferring consistently later heading under both glasshouse and field conditions through reduced environmental sensitivity. Our results suggest that breeding of brassica varieties for commercially valuable variation in heading date has been achieved through the selection of cis polymorphism at FLC, similar to that underpinning natural variation in A. thaliana. This understanding will allow for the selection of alleles with distinct sensitivities to cold and robust heading dates under variable climatic conditions, and will facilitate the breeding of varieties more resistant to climate change.

Indexed as

Polymorphism, GeneticArabidopsisArabidopsis ProteinsBrassicaCold TemperatureFlowersGene Expression Regulation, PlantMADS Domain ProteinsPlant ProteinsPlants, Genetically ModifiedQuantitative Trait LociArabidopsis ProteinsAt5g10140 protein, ArabidopsisMADS Domain ProteinsPlant Proteinsaccession numbers KU521322/3Brassica oleraceaenvironmental sensitivityFLCvernalization

Identifiers

PMID27232938
PMCPMC5053238
OpenAlexW2397898061

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.