Evidence map›Paper›PMID 27231902›Full record

ArticleInternational journal of molecular sciences2016

Crystal Structure of Cytochrome P450 (CYP105P2) from Streptomyces peucetius and Its Conformational Changes in Response to Substrate Binding.

Chang Woo Lee, Joo-Ho Lee, Hemraj Rimal, Hyun Park, Jun Hyuck Lee, Tae-Jin Oh

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
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  3. Review
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  5. Biomolecules & therapeutics · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Chang Woo LeeDivision of Polar Life Sciences, Korea Polar Research Institute, Incheon 406-840, Korea. justay@kopri.re.kr.
Joo-Ho LeeDepartment of BT-Convergent Pharmaceutical Engineering, Sunmoon University, Asansi 336-708, Korea. shadowjhl@empal.com.
Hemraj RimalDepartment of BT-Convergent Pharmaceutical Engineering, Sunmoon University, Asansi 336-708, Korea. rimalhem@gmail.com.
Hyun ParkDivision of Polar Life Sciences, Korea Polar Research Institute, Incheon 406-840, Korea. hpark@kopri.re.kr.
Jun Hyuck LeeDivision of Polar Life Sciences, Korea Polar Research Institute, Incheon 406-840, Korea. junhyucklee@kopri.re.kr.
Tae-Jin OhDepartment of BT-Convergent Pharmaceutical Engineering, Sunmoon University, Asansi 336-708, Korea. tjoh3782@sunmoon.ac.kr.
Korea Polar Research Institute · KRSun Moon University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cytochrome P450 monooxygenases (CYP, EC 1.14.14.1) belong to a large family of enzymes that catalyze the hydroxylation of various substrates. Here, we present the crystal structure of CYP105P2 isolated from Streptomyces peucetius ATCC27952 at a 2.1 Å resolution. The structure shows the presence of a pseudo-ligand molecule in the active site, which was co-purified fortuitously and is presumed to be a biphenyl derivative. Comparison with previously determined substrate-bound CYP structures showed that binding of the ligand produces large and distinctive conformational changes in α2-α3, α7-α9, and the C-terminal loop regions. This structural flexibility confirms our previous observation that CYP105P2 can accommodate a broad range of ligands. The structure complexed with a pseudo-ligand provides the first molecular view of CYP105P2-ligand interactions, and it indicates the involvement of hydrophobic residues (Pro82, Ala181, Met187, Leu189, Leu193, and Ile236) in the interactions between hydrophobic ligands and CYP105P2. These results provide useful insights into the structural changes involved in the recognition of different ligands by CYP105P2.

Indexed as

Bacterial ProteinsCatalytic DomainCrystallography, X-RayCytochrome P-450 Enzyme SystemHydrogen BondingHydrophobic and Hydrophilic InteractionsLigandsModels, MolecularProtein BindingProtein Structure, SecondaryStreptomycesBacterial ProteinsCytochrome P-450 Enzyme SystemLigandscrystal structurecytochrome P450Streptomyces peucetiusX-ray crystallography

Identifiers

PMID27231902
PMCPMC4926347
OpenAlexW2400575087

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.