Evidence map›Paper›PMID 27231839›Full record

ArticleThe Plant journal : for cell and molecular biology2016

Requirement for flap endonuclease 1 (FEN1) to maintain genomic stability and transcriptional gene silencing in Arabidopsis.

Jixiang Zhang, Shaojun Xie, Jian-Kang Zhu, Zhizhong Gong

Open access · greenAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
4.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Plant tolerance mechanisms to DNA-damaging UV stress.Journal of experimental botany · 2025
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  9. Base Excision DNA Repair in Plants:International journal of molecular sciences · 2023
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  13. Article
  14. Plant DNA Polymerases.International journal of molecular sciences · 2019
    Review
  15. Active DNA Demethylation in Plants.International journal of molecular sciences · 2019
    Review
  16. Review
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Jixiang ZhangState Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, 100193, China.
Shaojun XieShanghai Center for Plant Stress Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200032, China.
Jian-Kang ZhuShanghai Center for Plant Stress Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200032, China.
Zhizhong GongState Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, 100193, China. gongzz@cau.edu.cn.
China Agricultural University · CNPurdue University West Lafayette · USShanghai Institutes for Biological Sciences · CN

Funding

DNA Demethylation and Transcriptional Gene SilencingR01GM070795 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI ZHU, JIAN-KANG · 2004 to 2015
$4.0M
NIGMS NIH HHS R01 GM070795
6 · The paper itself

Abstract

As a central component in the maturation of Okazaki fragments, flap endonuclease 1 (FEN1) removes the 5'-flap and maintains genomic stability. Here, FEN1 was cloned as a suppressor of transcriptional gene silencing (TGS) from a forward genetic screen. FEN1 is abundant in the root and shoot apical meristems and FEN1-GFP shows a nucleolus-localized signal in tobacco cells. The Arabidopsis fen1-1 mutant is hypersensitive to methyl methanesulfonate and shows reduced telomere length. Interestingly, genome-wide chromatin immunoprecipitation and RNA sequencing results demonstrate that FEN1 mutation leads to a decrease in the level of H3K27me3 and an increase in the expression of a subset of genes marked with H3K27me3. Overall, these results uncover a role for FEN1 in mediating TGS as well as maintaining genome stability in Arabidopsis.

Indexed as

Gene SilencingGenomic InstabilityArabidopsisArabidopsis ProteinsCloning, MolecularFlap EndonucleasesGene Expression Regulation, PlantGreen Fluorescent ProteinsHistonesMethyl MethanesulfonateMutationNuclear ProteinsPlants, Genetically ModifiedTelomereArabidopsis ProteinsFlap EndonucleasesGreen Fluorescent ProteinsHistonesMethyl MethanesulfonateNuclear ProteinsROS1 protein, ArabidopsisArabidopsis thalianaChIP-seqDNA damage repairFEN1H3K27me3telomeretranscriptional gene silencing

Identifiers

PMID27231839
PMCPMC5508578
OpenAlexW2406787674

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.