Evidence map›Paper›PMID 27231350›Full record

ArticleThe Journal of biological chemistry2016

Peroxisome Proliferator-activated Receptor γ Coactivator-1 α Isoforms Selectively Regulate Multiple Splicing Events on Target Genes.

Vicente Martínez-Redondo, Paulo R Jannig, Jorge C Correia, Duarte M S Ferreira, Igor Cervenka, Jessica M Lindvall, Indranil Sinha, Manizheh Izadi, Amanda T Pettersson-Klein, Leandro Z Agudelo and 4 more

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Trial
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  4. bioRxiv : the preprint server for biology · 2026
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  20. RNA-bound PGC-1α controls gene expression in liquid-like nuclear condensates.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Vicente Martínez-RedondoFrom the Department of Physiology and Pharmacology, Molecular and Cellular Exercise Physiology Unit and.
Paulo R JannigFrom the Department of Physiology and Pharmacology, Molecular and Cellular Exercise Physiology Unit and School of Physical Education and Sport, University of São Paulo, 05508-030 São Paulo, Brazil, and.
Jorge C CorreiaFrom the Department of Physiology and Pharmacology, Molecular and Cellular Exercise Physiology Unit and.
Duarte M S FerreiraFrom the Department of Physiology and Pharmacology, Molecular and Cellular Exercise Physiology Unit and.
Igor CervenkaFrom the Department of Physiology and Pharmacology, Molecular and Cellular Exercise Physiology Unit and.
Jessica M LindvallDepartment of Biosciences and Nutrition, Novum, Karolinska Institutet, SE-141 83 Huddinge, Sweden.
Indranil SinhaDepartment of Biosciences and Nutrition, Novum, Karolinska Institutet, SE-141 83 Huddinge, Sweden.
Manizheh IzadiFrom the Department of Physiology and Pharmacology, Molecular and Cellular Exercise Physiology Unit and.
Amanda T Pettersson-KleinFrom the Department of Physiology and Pharmacology, Molecular and Cellular Exercise Physiology Unit and.
Leandro Z AgudeloFrom the Department of Physiology and Pharmacology, Molecular and Cellular Exercise Physiology Unit and.
Alfredo Gimenez-CassinaDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, SE-171 77 Stockholm, Sweden.
Patricia C BrumSchool of Physical Education and Sport, University of São Paulo, 05508-030 São Paulo, Brazil, and.
Karin Dahlman-WrightDepartment of Biosciences and Nutrition, Novum, Karolinska Institutet, SE-141 83 Huddinge, Sweden.
Jorge L RuasFrom the Department of Physiology and Pharmacology, Molecular and Cellular Exercise Physiology Unit and Jorge.Ruas@ki.se.

Funding

MOLECULAR ANALYSIS OF A YEAST TRANSCRIPTIONAL REGULATORR01GM055763 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI AUBLE, DAVID T. · 1997 to 2021
$6.4M
NIGMS NIH HHS R01 GM055763
6 · The paper itself

Abstract

Endurance and resistance exercise training induces specific and profound changes in the skeletal muscle transcriptome. Peroxisome proliferator-activated receptor γ coactivator-1 α (PGC-1α) coactivators are not only among the genes differentially induced by distinct training methods, but they also participate in the ensuing signaling cascades that allow skeletal muscle to adapt to each type of exercise. Although endurance training preferentially induces PGC-1α1 expression, resistance exercise activates the expression of PGC-1α2, -α3, and -α4. These three alternative PGC-1α isoforms lack the arginine/serine-rich (RS) and RNA recognition motifs characteristic of PGC-1α1. Discrete functions for PGC-1α1 and -α4 have been described, but the biological role of PGC-1α2 and -α3 remains elusive. Here we show that different PGC-1α variants can affect target gene splicing through diverse mechanisms, including alternative promoter usage. By analyzing the exon structure of the target transcripts for each PGC-1α isoform, we were able to identify a large number of previously unknown PGC-1α2 and -α3 target genes and pathways in skeletal muscle. In particular, PGC-1α2 seems to mediate a decrease in the levels of cholesterol synthesis genes. Our results suggest that the conservation of the N-terminal activation and repression domains (and not the RS/RNA recognition motif) is what determines the gene programs and splicing options modulated by each PGC-1α isoform. By using skeletal muscle-specific transgenic mice for PGC-1α1 and -α4, we could validate, in vivo, splicing events observed in in vitro studies. These results show that alternative PGC-1α variants can affect target gene expression both quantitatively and qualitatively and identify novel biological pathways under the control of this system of coactivators.

Indexed as

Alternative SplicingAnimalsCells, CulturedConserved SequenceExonsGene Expression RegulationGene Regulatory NetworksMiceMice, TransgenicMuscle Fibers, SkeletalMuscle, SkeletalOxysterol Binding ProteinsPeroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alphaPromoter Regions, GeneticProtein IsoformsProtein StabilityOxysterol Binding ProteinsPeroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alphaPpargc1a protein, mouseProtein IsoformsReceptors, Steroidalternative splicingexerciseexon arraygene regulationperoxisome proliferator-activated receptor γ coactivator 1-α (PGC-1α) (PPARGC1A)PGC-1α2PGC-1α3PGC-1α4skeletal muscle

Identifiers

PMID27231350
PMCPMC4946932

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.