ArticleBiology open2016
Genome-wide analysis of auxin response factor gene family members in medicinal model plant Salvia miltiorrhiza.
Article in Biology open, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed, 31 citations in OpenAlex.
- MeJA-Induced Plant Disease Resistance: A Review.Plants (Basel, Switzerland) · 2026Review
- B-class gene GLOBOSA - a facilitator for enriched species diversity of Salvia in the New World?Plant biology (Stuttgart, Germany) · 2025Article
- Comprehensive genome-wide analysis of ARF transcription factors in orchardgrass (Dactylis glomerata): the positive regulatory role of DgARF7 in drought resistance.BMC genomics · 2025Article
- Biosynthesis and signal transduction of plant growth regulators and their effects on bioactive compound production in Salvia miltiorrhiza (Danshen).Chinese medicine · 2024Review
- A non-canonicalFrontiers in plant science · 2024Article
- Comparative Microscopic, Transcriptome and IAA Content Analyses Reveal the Stem Growth Variations in Two CultivarsPlants (Basel, Switzerland) · 2023Article
- LkARF7 and LkARF19 overexpression promote adventitious root formation in a heterologous poplar model by positively regulating LkBBM1.Communications biology · 2023Article
- Tubby-like proteins (TLPs) transcription factor in different regulatory mechanism in plants: a review.Plant molecular biology · 2022Review
- The Expression Profiles of the Salvia miltiorrhiza 3-Hydroxy-3-methylglutaryl-coenzyme A Reductase 4 Gene and Its Influence on the Biosynthesis of TanshinonesMolecules (Basel, Switzerland) · 2022Article
- Genome-wide identification of the Tubby-Like Protein (TLPs) family in medicinal model plantPeerJ · 2021Article
- ARF family identification inPeerJ · 2020Article
- Genome-Wide Characterization and Analysis of bHLH Transcription Factors Related to Crocin Biosynthesis inBioMed research international · 2020Article
- geneHummus: an R package to define gene families and their expression in legumes and beyond.BMC genomics · 2019Article
- Identification and characterization of Populus microRNAs in response to plant growth-promoting endophytic Streptomyces sp. SSD49.World journal of microbiology & biotechnology · 2019Article
- Differential Expression of MicroRNAs During Root Formation inOpen life sciences · 2019Article
- Article
- Genome-wide identification of the GhARF gene family reveals that GhARF2 and GhARF18 are involved in cotton fibre cell initiation.Journal of experimental botany · 2018Article
- Genome-wide characterization and analysis of bHLH transcription factors inActa pharmaceutica Sinica. B · 2018Article
- Genomic survey of bZIP transcription factor genes related to tanshinone biosynthesis inActa pharmaceutica Sinica. B · 2018Article
- Genome-Wide Identification, Phylogeny, and Expression Analysis of ARF Genes Involved in Vegetative Organs Development in Switchgrass.International journal of genomics · 2018Article
Corrections and comments
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Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Auxin response factors (ARFs) can function as transcriptional activators or repressors to regulate the expression of auxin response genes by specifically binding to auxin response elements (AuxREs) during plant development. Based on a genome-wide strategy using the medicinal model plant Salvia miltiorrhiza, 25 S. miltiorrhiza ARF (SmARF) gene family members in four classes (class Ia, IIa, IIb and III) were comprehensively analyzed to identify characteristics including gene structures, conserved domains, phylogenetic relationships and expression patterns. In a hybrid analysis of the phylogenetic tree, microRNA targets, and expression patterns of SmARFs in different organs, root tissues, and methyl jasmonate or indole-3-acetic acid treatment conditions, we screened for candidate SmARFs involved in various developmental processes of S. miltiorrhiza Based on this analysis, we predicted that SmARF25, SmARF7, SmARF16 and SmARF20 are involved in flower, leaf, stem and root development, respectively. With the further insight into the targets of miR160 and miR167, specific SmARF genes in S. miltiorrhiza might encode products that participate in biological processes as described for ARF genes in Arabidopsis Our results provide a foundation for understanding the molecular basis and regulatory mechanisms of SmARFs in S. miltiorrhiza.
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