Evidence map›Paper›PMID 27229711›Full record

ArticleScientific reports2016

Restrictive influence of SAMHD1 on Hepatitis B Virus life cycle.

Andreas F R Sommer, Lise Rivière, Bingqian Qu, Kerstin Schott, Maximilian Riess, Yi Ni, Caitlin Shepard, Esther Schnellbächer, Malin Finkernagel, Kiyoshi Himmelsbach and 9 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
7.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 63 citations in OpenAlex.

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  16. The CCR5 Gene Edited CD34Frontiers in immunology · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 2 countries.

Andreas F R SommerHost-Pathogen Interactions, Paul-Ehrlich-Institute, Langen, Germany.
Lise RivièreHost-Pathogen Interactions, Paul-Ehrlich-Institute, Langen, Germany.
Bingqian QuDepartment of Infectious Diseases, Molecular Virology, University Hospital Heidelberg, Heidelberg, Germany.
Kerstin SchottHost-Pathogen Interactions, Paul-Ehrlich-Institute, Langen, Germany.
Maximilian RiessHost-Pathogen Interactions, Paul-Ehrlich-Institute, Langen, Germany.
Yi NiDepartment of Infectious Diseases, Molecular Virology, University Hospital Heidelberg, Heidelberg, Germany.
Caitlin ShepardCenter for Drug Discovery, Department of Pediatrics, Emory Center for AIDS Research, Emory University, Children's Healthcare of Atlanta, Atlanta, USA.
Esther SchnellbächerHost-Pathogen Interactions, Paul-Ehrlich-Institute, Langen, Germany.
Malin FinkernagelDivision of Virology, Paul-Ehrlich-Institute, Langen, Germany.
Kiyoshi HimmelsbachDivision of Virology, Paul-Ehrlich-Institute, Langen, Germany.
Karin WelzelDivision of Medical Biotechnology, Paul-Ehrlich-Institute, Langen, Germany.
Nadja KetternDivision of Virology, Paul-Ehrlich-Institute, Langen, Germany.
Christian DonnerhakDivision of Virology, Paul-Ehrlich-Institute, Langen, Germany.
Carsten MünkClinic for Gastroenterology, Hepatology and Infectiology, Medical Faculty, Heinrich-Heine-University, Düsseldorf, Germany.
Egbert FloryDivision of Medical Biotechnology, Paul-Ehrlich-Institute, Langen, Germany.
Juliane LieseGeneral and Visceral Surgery, Goethe-University, Frankfurt, Germany.
Baek KimCenter for Drug Discovery, Department of Pediatrics, Emory Center for AIDS Research, Emory University, Children's Healthcare of Atlanta, Atlanta, USA.
Stephan UrbanDepartment of Infectious Diseases, Molecular Virology, University Hospital Heidelberg, Heidelberg, Germany.
Renate KönigHost-Pathogen Interactions, Paul-Ehrlich-Institute, Langen, Germany.
Paul Ehrlich Institut · DEHeidelberg University · DEChildren's Healthcare of Atlanta · USGoethe University Frankfurt · DEHeinrich Heine University Düsseldorf · DE

Funding

Replication fidelity and lentiviral pathogenesisR01AI049781 · NIAID · UNIVERSITY OF ROCHESTER · PI KIM, BAEK · 2002 to 2016
$4.9M
SAMHD1 controls dNTP pool and HIV sensitivity to NRTIsR01GM104198 · NIGMS · UNIVERSITY OF ROCHESTER · PI KIM, BAEK · 2012 to 2018
$2.3M
NIAID NIH HHS R01 AI049781NIGMS NIH HHS R01 GM104198
6 · The paper itself

Abstract

Deoxynucleotide triphosphates (dNTPs) are essential for efficient hepatitis B virus (HBV) replication. Here, we investigated the influence of the restriction factor SAMHD1, a dNTP hydrolase (dNTPase) and RNase, on HBV replication. We demonstrated that silencing of SAMHD1 in hepatic cells increased HBV replication, while overexpression had the opposite effect. SAMHD1 significantly affected the levels of extracellular viral DNA as well as intracellular reverse transcription products, without affecting HBV RNAs or cccDNA. SAMHD1 mutations that interfere with the dNTPase activity (D137N) or in the catalytic center of the histidine-aspartate (HD) domain (D311A), and a phospho-mimetic mutation (T592E), abrogated the inhibitory activity. In contrast, a mutation diminishing the potential RNase but not dNTPase activity (Q548A) and a mutation disabling phosphorylation (T592A) did not affect antiviral activity. Moreover, HBV restriction by SAMHD1 was rescued by addition of deoxynucleosides. Although HBV infection did not directly affect protein level or phosphorylation of SAMHD1, the virus upregulated intracellular dATPs. Interestingly, SAMHD1 was dephosphorylated, thus in a potentially antiviral-active state, in primary human hepatocytes. Furthermore, SAMHD1 was upregulated by type I and II interferons in hepatic cells. These results suggest that SAMHD1 is a relevant restriction factor for HBV and restricts reverse transcription through its dNTPase activity.

Indexed as

HepatocytesMutation, MissenseAmino Acid SubstitutionHepatitis B virusHep G2 CellsHumansSAM Domain and HD Domain-Containing Protein 1Virus ReplicationSAM Domain and HD Domain-Containing Protein 1SAMHD1 protein, human

Identifiers

PMID27229711
PMCPMC4882586
OpenAlexW2403048094

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.