Evidence map›Paper›PMID 27228336›Full record

ArticlePlant biotechnology journal2017

Phosphorus remobilization from rice flag leaves during grain filling: an RNA-seq study.

Kwanho Jeong, Abdul Baten, Daniel L E Waters, Omar Pantoja, Cecile C Julia, Matthias Wissuwa, Sigrid Heuer, Tobias Kretzschmar, Terry J Rose

Open access · goldAbstract read
In one paragraph

Article in Plant biotechnology journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
12.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 71 citations in OpenAlex.

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  9. Genetic improvement of phosphate-limited photosynthesis for high yield in rice.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Article
  11. Review
  12. Article
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  14. Adaptive strategies of plants to conserve internal phosphorus under P deficient condition to improve P utilization efficiency.Physiology and molecular biology of plants : an international journal of functional plant biology · 2022
    Review
  15. Prospects of genetics and breeding for low-phosphate tolerance: an integrated approach from soil to cell.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 4 countries.

Kwanho JeongSouthern Cross Plant Science, Southern Cross University, Lismore, NSW, Australia.
Abdul BatenSouthern Cross Plant Science, Southern Cross University, Lismore, NSW, Australia.
Daniel L E WatersSouthern Cross Plant Science, Southern Cross University, Lismore, NSW, Australia.
Omar PantojaSouthern Cross Plant Science, Southern Cross University, Lismore, NSW, Australia.
Cecile C JuliaSouthern Cross Plant Science, Southern Cross University, Lismore, NSW, Australia.
Matthias WissuwaCrop, Livestock and Environment Division, Japan International Research Center for Agricultural Sciences, Tsukuba, Ibaraki, Japan.
Sigrid HeuerUniversity of Adelaide, School of Agriculture Food and Wine / Australian Centre for Plant Functional Genomics (ACPFG), Adelaide, SA, Australia.
Tobias KretzschmarGenotyping Services Laboratory, International Rice Research Institute (IRRI), Metro Manila, Philippines.
Terry J RoseSouthern Cross Plant Science, Southern Cross University, Lismore, NSW, Australia.
Southern Cross University · AUInternational Rice Research Institute · PHJapan International Research Center for Agricultural Sciences · JPThe University of Adelaide · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The physiology and molecular regulation of phosphorus (P) remobilization from vegetative tissues to grains during grain filling is poorly understood, despite the pivotal role it plays in the global P cycle. To test the hypothesis that a subset of genes involved in the P starvation response are involved in remobilization of P from flag leaves to developing grains, we conducted an RNA-seq analysis of rice flag leaves during the preremobilization phase (6 DAA) and when the leaves were acting as a P source (15 DAA). Several genes that respond to phosphate starvation, including three purple acid phosphatases (OsPAP3, OsPAP9b and OsPAP10a), were significantly up-regulated at 15 DAA, consistent with a role in remobilization of P from flag leaves during grain filling. A number of genes that have not been implicated in the phosphate starvation response, OsPAP26, SPX-MFS1 (a putative P transporter) and SPX-MFS2, also showed expression profiles consistent with involvement in P remobilization from senescing flag leaves. Metabolic pathway analysis using the KEGG system suggested plastid membrane lipid synthesis is a critical process during the P remobilization phase. In particular, the up-regulation of OsPLDz2 and OsSQD2 at 15 DAA suggested phospholipids were being degraded and replaced by other lipids to enable continued cellular function while liberating P for export to developing grains. Three genes associated with RNA degradation that have not previously been implicated in the P starvation response also showed expression profiles consistent with a role in P mobilization from senescing flag leaves.

Indexed as

Gene Expression Regulation, PlantAgingBase SequenceChromosome MappingEdible GrainGenes, PlantLipid MetabolismMetabolic Networks and PathwaysOryzaPhosphorusPlant LeavesPlant ProteinsSequence Analysis, RNAUp-RegulationPhosphorusPlant Proteinsdifferential gene expressionIllumina sequencingOryza sativaphosphorus translocationsenescence

Identifiers

PMID27228336
PMCPMC5253468
OpenAlexW2395223088

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.