ArticlePloS one2016
LncRNApred: Classification of Long Non-Coding RNAs and Protein-Coding Transcripts by the Ensemble Algorithm with a New Hybrid Feature.
Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed.
- Positional frequency chaos game representation for machine learning-based classification of crop lncRNAs.bioRxiv : the preprint server for biology · 2025Article
- DNABERT-based explainable lncRNA identification in plant genome assemblies.Computational and structural biotechnology journal · 2023Article
- Common Features in lncRNA Annotation and Classification: A Survey.Non-coding RNA · 2021Review
- Advances in Computational Methodologies for Classification and Sub-Cellular Locality Prediction of Non-Coding RNAs.International journal of molecular sciences · 2021Review
- The role of micropeptides in biology.Cellular and molecular life sciences : CMLS · 2021Review
- lncRNA LIFR‑AS1 inhibits gastric carcinoma cell proliferation, migration and invasion by sponging miR‑4698.Molecular medicine reports · 2021Article
- AI applications in functional genomics.Computational and structural biotechnology journal · 2021Review
- Predicting Long non-coding RNAs through feature ensemble learning.BMC genomics · 2020Article
- Secreted breast tumor interstitial fluid microRNAs and their target genes are associated with triple-negative breast cancer, tumor grade, and immune infiltration.Breast cancer research : BCR · 2020Article
- RNAsamba: neural network-based assessment of the protein-coding potential of RNA sequences.NAR genomics and bioinformatics · 2020Article
- The computational approaches of lncRNA identification based on coding potential:Computational and structural biotechnology journal · 2020Review
- Predicting functional long non-coding RNAs validated by low throughput experiments.RNA biology · 2019Article
- Article
- Genomic data mining for functional annotation of human long noncoding RNAs.Journal of Zhejiang University. Science. B · 2019Review
- CPPred: coding potential prediction based on the global description of RNA sequence.Nucleic acids research · 2019Article
- Article
- Review
- Non-coding RNAs Shaping Muscle.Frontiers in cell and developmental biology · 2019Review
- Sub-pathway analysis for severe burns injury patients: Identification of potential key lncRNAs by analyzing lncRNA-mRNA profile.Experimental and therapeutic medicine · 2018Article
- Elucidating the Role of Host Long Non-Coding RNA during Viral Infection: Challenges and Paths Forward.Vaccines · 2017Review
Corrections and comments
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
As a novel class of noncoding RNAs, long noncoding RNAs (lncRNAs) have been verified to be associated with various diseases. As large scale transcripts are generated every year, it is significant to accurately and quickly identify lncRNAs from thousands of assembled transcripts. To accurately discover new lncRNAs, we develop a classification tool of random forest (RF) named LncRNApred based on a new hybrid feature. This hybrid feature set includes three new proposed features, which are MaxORF, RMaxORF and SNR. LncRNApred is effective for classifying lncRNAs and protein coding transcripts accurately and quickly. Moreover,our RF model only requests the training using data on human coding and non-coding transcripts. Other species can also be predicted by using LncRNApred. The result shows that our method is more effective compared with the Coding Potential Calculate (CPC). The web server of LncRNApred is available for free at http://mm20132014.wicp.net:57203/LncRNApred/home.jsp.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.