Evidence map›Paper›PMID 27226770›Full record

ArticleCurrent genomics2016

The Relation Between Promoter Chromatin Status, Xyr1 and Cellulase Ex-pression in Trichoderma reesei.

Thiago M Mello-de-Sousa, Alice Rassinger, Christian Derntl, Marcio J Poças-Fonseca, Robert L Mach, Astrid R Mach-Aigner

Open access · bronzeAbstract read
In one paragraph

Article in Current genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 70 citations in OpenAlex.

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  12. Deletion of either the regulatory geneBiotechnology for biofuels · 2019
    Article
  13. Article
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  15. Review
  16. Constitutive hyperproduction of sorbicillinoids inBiotechnology for biofuels · 2018
    Article
  17. The Promoter Toolbox for Recombinant Gene Expression inFrontiers in bioengineering and biotechnology · 2018
    Review
  18. Truncation of the transcriptional repressor protein Cre1 inFungal biology and biotechnology · 2018
    Article
  19. Article
  20. Carbon Catabolite Repression in Filamentous Fungi.International journal of molecular sciences · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Thiago M Mello-de-SousaDepartment for Biotechnology and Microbiology, TU Wien, Vienna, Austria;
Alice RassingerDepartment for Biotechnology and Microbiology, TU Wien, Vienna, Austria;
Christian DerntlDepartment for Biotechnology and Microbiology, TU Wien, Vienna, Austria;
Marcio J Poças-FonsecaDepartment of Genetics and Morphology, Institute of Biological Sciences, University of Brasilia, Brasília-DF, Brazil.
Robert L MachDepartment for Biotechnology and Microbiology, TU Wien, Vienna, Austria;
Astrid R Mach-AignerDepartment for Biotechnology and Microbiology, TU Wien, Vienna, Austria;
TU Wien · ATUniversidade de Brasília · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ascomycete Trichoderma reesei is used for the production of plant cell wall-degrading enzymes in industrial scale. The interplay of the transactivator Xyr1 and the repressor Cre1 mainly regulates the expression of these enzymes. During induc-ing conditions, such as in the presence of sophorose, the transcription of the two major cellulase-encoding genes, cbh1 and cbh2, is activated as well as the expression of xyr1. In the presence of D-glucose carbon catabolite repression mediated by Cre1 takes place and the expression of Xyr1 and the plant cell wall-degrading enzymes is down-regulated. In this study we compare the chromatin status of xyr1, cbh1, and cbh2 promoters in the wild-type strain and the Cre1-deficient strain Rut-C30. Chromatin rearrangement occurs in the xyr1 promoter during induction on sophorose. Chromatin opening and protein-DNA interactions in the xyr1 promoter were detected especially in a region located 0.9 kb upstream the translation start co-don, which bears several putative Cre1-binding sites and a CCAAT-box. Moreover, the xyr1 promoter is overall more acces-sible in a cre1-truncated background, no matter which carbon source is present. This makes the xyr1 regulatory sequence a good target for promoter engineering aiming at the enhancement of cellulase production.

Indexed as

CellulasesChromatinPromoterRut-C30Trichoderma reeseiXyr1.

Identifiers

PMID27226770
PMCPMC4864836
OpenAlexW2500474839

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.