Evidence map›Paper›PMID 27226624›Full record

ArticleThe Journal of biological chemistry2016

A Native Threonine Coordinates Ordered Water to Tune Light-Oxygen-Voltage (LOV) Domain Photocycle Kinetics and Osmotic Stress Signaling in Trichoderma reesei ENVOY.

Jameela Lokhandwala, Rafael I Silverman Y de la Vega, Hilary C Hopkins, Collin W Britton, Aroa Rodriguez-Iglesias, Roberto Bogomolni, Monika Schmoll, Brian D Zoltowski

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
9.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Regulation of plant cell wall degradation by light inFungal biology and biotechnology · 2018
    Review
  7. Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Jameela LokhandwalaFrom the Department of Chemistry, Southern Methodist University, Dallas, Texas 75275.
Rafael I Silverman Y de la Vegathe Department of Chemistry and Biochemistry, University of California Santa Cruz, Santa Cruz, California 95064, and.
Hilary C HopkinsFrom the Department of Chemistry, Southern Methodist University, Dallas, Texas 75275.
Collin W BrittonFrom the Department of Chemistry, Southern Methodist University, Dallas, Texas 75275.
Aroa Rodriguez-Iglesiasthe Department of Health and Environment, Austrian Institute of Technology, Bioresources, 3430 Tulln, Austria.
Roberto Bogomolnithe Department of Chemistry and Biochemistry, University of California Santa Cruz, Santa Cruz, California 95064, and.
Monika Schmollthe Department of Health and Environment, Austrian Institute of Technology, Bioresources, 3430 Tulln, Austria.
Brian D ZoltowskiFrom the Department of Chemistry, Southern Methodist University, Dallas, Texas 75275, bzoltowski@smu.edu.
Southern Methodist University · USAustrian Institute of Technology · ATUniversity of California, Santa Cruz · US

Funding

Austrian Science Fund FWF P 24350
6 · The paper itself

Abstract

Light-oxygen-voltage (LOV) domain-containing proteins function as small light-activated modules capable of imparting blue light control of biological processes. Their small modular nature has made them model proteins for allosteric signal transduction and optogenetic devices. Despite intense research, key aspects of their signal transduction mechanisms and photochemistry remain poorly understood. In particular, ordered water has been identified as a possible key mediator of photocycle kinetics, despite the lack of ordered water in the LOV active site. Herein, we use recent crystal structures of a fungal LOV protein ENVOY to interrogate the role of Thr(101) in recruiting water to the flavin active site where it can function as an intrinsic base to accelerate photocycle kinetics. Kinetic and molecular dynamic simulations confirm a role in solvent recruitment to the active site and identify structural changes that correlate with solvent recruitment. In vivo analysis of T101I indicates a direct role of the Thr(101) position in mediating adaptation to osmotic stress, thereby verifying biological relevance of ordered water in LOV signaling. The combined studies identify position 101 as a mediator of both allostery and photocycle catalysis that can impact organism physiology.

Indexed as

Signal TransductionHydrogen BondingKineticsOsmotic PressureOxygenPhylogenyThreonineTrichodermaWaterOxygenThreonineWaterkineticsLOV domainmolecular dynamicsoptogeneticsosmotic stressphotobiologystructure-function

Identifiers

PMID27226624
PMCPMC4938200
OpenAlexW2396697577

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.