Evidence map›Paper›PMID 27226614›Full record

ArticleThe Journal of biological chemistry2016

Sulfur Denitrosylation by an Engineered Trx-like DsbG Enzyme Identifies Nucleophilic Cysteine Hydrogen Bonds as Key Functional Determinant.

Céline Lafaye, Inge Van Molle, Veronica Tamu Dufe, Khadija Wahni, Ariane Boudier, Pierre Leroy, Jean-François Collet, Joris Messens

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Céline LafayeFrom the de Duve Institute, Université Catholique de Louvain, B-1200 Brussels, Belgium, WELBIO, B-1200 Brussels, Belgium, the Brussels Center for Redox Biology, B-1050 Brussels, Belgium.
Inge Van Mollethe Brussels Center for Redox Biology, B-1050 Brussels, Belgium, the Structural Biology Research Center, Vlaams Instituut voor Biotechnologie, B-1050 Brussels, Belgium, the Structural Biology Brussels, Vrije Universiteit Brussel, B-1050 Brussels, Belgium, and.
Veronica Tamu DufeFrom the de Duve Institute, Université Catholique de Louvain, B-1200 Brussels, Belgium, WELBIO, B-1200 Brussels, Belgium, the Brussels Center for Redox Biology, B-1050 Brussels, Belgium, the Structural Biology Research Center, Vlaams Instituut voor Biotechnologie, B-1050 Brussels, Belgium, the Structural Biology Brussels, Vrije Universiteit Brussel, B-1050 Brussels, Belgium, and.
Khadija Wahnithe Brussels Center for Redox Biology, B-1050 Brussels, Belgium, the Structural Biology Research Center, Vlaams Instituut voor Biotechnologie, B-1050 Brussels, Belgium, the Structural Biology Brussels, Vrije Universiteit Brussel, B-1050 Brussels, Belgium, and.
Ariane Boudierthe Université de Lorraine, Faculté de Pharmacie, 54000 Nancy, France.
Pierre Leroythe Université de Lorraine, Faculté de Pharmacie, 54000 Nancy, France.ORCID 0000-0002-9389-2698
Jean-François ColletFrom the de Duve Institute, Université Catholique de Louvain, B-1200 Brussels, Belgium, WELBIO, B-1200 Brussels, Belgium, the Brussels Center for Redox Biology, B-1050 Brussels, Belgium, jfcollet@uclouvain.be.ORCID 0000-0001-8069-7036
Joris Messensthe Brussels Center for Redox Biology, B-1050 Brussels, Belgium, the Structural Biology Research Center, Vlaams Instituut voor Biotechnologie, B-1050 Brussels, Belgium, the Structural Biology Brussels, Vrije Universiteit Brussel, B-1050 Brussels, Belgium, and joris.messens@vib-vub.be.ORCID 0000-0002-2128-8264
Vrije Universiteit Brussel · BEde Duve Institute · BEUniversité de Lorraine · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Exposure of bacteria to NO results in the nitrosylation of cysteine thiols in proteins and low molecular weight thiols such as GSH. The cells possess enzymatic systems that catalyze the denitrosylation of these modified sulfurs. An important player in these systems is thioredoxin (Trx), a ubiquitous, cytoplasmic oxidoreductase that can denitrosylate proteins in vivo and S-nitrosoglutathione (GSNO) in vitro However, a periplasmic or extracellular denitrosylase has not been identified, raising the question of how extracytoplasmic proteins are repaired after nitrosative damage. In this study, we tested whether DsbG and DsbC, two Trx family proteins that function in reducing pathways in the Escherichia coli periplasm, also possess denitrosylating activity. Both DsbG and DsbC are poorly reactive toward GSNO. Moreover, DsbG is unable to denitrosylate its specific substrate protein, YbiS. Remarkably, by borrowing the CGPC active site of E. coli Trx-1 in combination with a T200M point mutation, we transformed DsbG into an enzyme highly reactive toward GSNO and YbiS. The pKa of the nucleophilic cysteine, as well as the redox and thermodynamic properties of the engineered DsbG are dramatically changed and become similar to those of E. coli Trx-1. X-ray structural insights suggest that this results from a loss of two direct hydrogen bonds to the nucleophilic cysteine sulfur in the DsbG mutant. Our results highlight the plasticity of the Trx structural fold and reveal that the subtle change of the number of hydrogen bonds in the active site of Trx-like proteins is the key factor that thermodynamically controls reactivity toward nitrosylated compounds.

Indexed as

Binding SitesCysteineEscherichia coliEscherichia coli ProteinsHydrogen BondingHydrogen-Ion ConcentrationModels, MolecularMutagenesis, Site-DirectedNitrosationOxidoreductasesPeriplasmic ProteinsProtein EngineeringProtein StabilityRecombinant Fusion ProteinsS-NitrosoglutathioneSulfurCysteineDsbG protein, E coliEscherichia coli ProteinsOxidoreductasesPeriplasmic ProteinsRecombinant Fusion ProteinsS-NitrosoglutathioneSulfurThioredoxinsYbiS protein, E coliantioxidantbacteriabioengineeringcrystal structurereactive nitrogen species (RNS)redox regulationS-nitrosylationthiolthioredoxin

Identifiers

PMID27226614
PMCPMC4946920
OpenAlexW2407793009

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.