Evidence map›Paper›PMID 27226596›Full record

ArticleThe Journal of biological chemistry2016

Endoplasmic Reticulum-associated Degradation of Pca1p, a Polytopic Protein, via Interaction with the Proteasome at the Membrane.

Nathan Smith, David J Adle, Miaoyun Zhao, Xiaojuan Qin, Heejeong Kim, Jaekwon Lee

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Nathan SmithFrom the Department of Biochemistry and Redox Biology Center, University of Nebraska, Lincoln, Nebraska, 68588-0664 and.
David J AdleFrom the Department of Biochemistry and Redox Biology Center, University of Nebraska, Lincoln, Nebraska, 68588-0664 and.
Miaoyun ZhaoFrom the Department of Biochemistry and Redox Biology Center, University of Nebraska, Lincoln, Nebraska, 68588-0664 and.
Xiaojuan QinFrom the Department of Biochemistry and Redox Biology Center, University of Nebraska, Lincoln, Nebraska, 68588-0664 and the College of Life and Environmental Sciences, Shanghai Normal University, Shanghai, China 200234.
Heejeong KimFrom the Department of Biochemistry and Redox Biology Center, University of Nebraska, Lincoln, Nebraska, 68588-0664 and.
Jaekwon LeeFrom the Department of Biochemistry and Redox Biology Center, University of Nebraska, Lincoln, Nebraska, 68588-0664 and jlee7@unl.edu.
University of Nebraska–Lincoln · USShanghai Normal University · CN

Funding

Redox Biology CenterP30GM103335 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI BECKER, DONALD F · 2012 to 2016
$4.3M
Mechanistic insights into cellular metal detoxificationR01ES016337 · NIEHS · UNIVERSITY OF NEBRASKA LINCOLN · PI LEE, JAEKWON · 2009 to 2013
$1.4M
NIEHS NIH HHS R01 ES016337NIGMS NIH HHS P30 GM103335
6 · The paper itself

Abstract

Endoplasmic reticulum-associated degradation (ERAD) plays a critical role in the destruction of terminally misfolded proteins at the secretory pathway. The system also regulates expression levels of several proteins such as Pca1p, a cadmium exporter in yeast. To gain better insight into the mechanisms underlying ERAD of Pca1p and other polytopic proteins by the proteasome in the cytosol, our study determined the roles for the molecular factors of ERAD in dislodging Pca1p from the endoplasmic reticulum (ER). Inactivation of the 20S proteasome leads to accumulation of ubiquitinated Pca1p in the ER membrane, suggesting a role for the proteasome in extraction of Pca1p from the ER. Pca1p formed a complex with the proteasome at the membrane in a Doa10p E3 ligase-dependent manner. Cdc48p is required for recruiting the proteasome to Pca1p. Although the Ufd2p E4 ubiquitin chain extension enzyme is involved in efficient degradation of Pca1p, Ufd2p-deficient cells did not affect the formation of a complex between Pca1p and the proteasome. Two other polytopic membrane proteins undergoing ERAD, Ste6*p and Hmg2p, also displayed the same outcomes observed for Pca1p. However, poly-ubiquitinated Cpy1*p, a luminal ERAD substrate, was detected in the cytosol independent of proteolytic activities of the proteasome. These results indicate that extraction and degradation of polytopic membrane proteins at the ER is a coupled event. This mechanism would relieve the cost of exposed hydrophobic domains in the cytosol during ERAD.

Indexed as

Endoplasmic Reticulum-Associated DegradationAdenosine TriphosphatasesATP-Binding Cassette TransportersCation Transport ProteinsCell Cycle ProteinsCytosolEndoplasmic ReticulumHydroxymethylglutaryl CoA ReductasesLeupeptinsProteasome Endopeptidase ComplexProteasome InhibitorsRecombinant Fusion ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsUbiquitinationUbiquitin-Conjugating EnzymesAdenosine TriphosphatasesATP-Binding Cassette Transportersbenzyloxycarbonylleucyl-leucyl-leucine aldehydeCation Transport ProteinsCDC48 protein, S cerevisiaeCell Cycle ProteinsHMG2 protein, S cerevisiaeHydroxymethylglutaryl CoA ReductasesLeupeptinsPCA1 protein, S cerevisiaeProteasome Endopeptidase ComplexProteasome InhibitorsRecombinant Fusion ProteinsSaccharomyces cerevisiae ProteinsSTE6 protein, S cerevisiaeUbiquitin-Conjugating EnzymesUbiquitin-Protein LigasesUFD2 protein, S cerevisiaeValosin Containing ProteinATPasecadmium transporterdegronendoplasmic reticulum-associated protein degradation (ERAD)membrane proteinmetal homeostasisproteasomeubiquitin ligaseyeast

Identifiers

PMID27226596
PMCPMC4946925
OpenAlexW2391179902

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.