Evidence map›Paper›PMID 27226577›Full record

ArticleThe Journal of biological chemistry2016

Reciprocal Regulation of the Cardiac Epigenome by Chromatin Structural Proteins Hmgb and Ctcf: IMPLICATIONS FOR TRANSCRIPTIONAL REGULATION.

Emma Monte, Manuel Rosa-Garrido, Elaheh Karbassi, Haodong Chen, Rachel Lopez, Christoph D Rau, Jessica Wang, Stanley F Nelson, Yong Wu, Enrico Stefani and 5 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Proteomics of the heart.Physiological reviews · 2024
    Review
  4. Article
  5. Structure and Functions of HMGB2 Protein.International journal of molecular sciences · 2023
    Review
  6. Review
  7. Article
  8. How Chromatin Stiffens Fibroblasts.Current opinion in physiology · 2022
    Article
  9. Article
  10. Nucleosome proteostasis and histone turnover.Frontiers in molecular biosciences · 2022
    Review
  11. Review
  12. Review
  13. Article
  14. Three-dimensional chromatin organization in cardiac development and disease.Journal of molecular and cellular cardiology · 2021
    Review
  15. Review
  16. Article
  17. Epigenetics in dilated cardiomyopathy.Current opinion in cardiology · 2019
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 2 countries.

Emma MonteFrom the Departments of Anesthesiology.
Manuel Rosa-GarridoFrom the Departments of Anesthesiology.
Elaheh KarbassiFrom the Departments of Anesthesiology.
Haodong ChenFrom the Departments of Anesthesiology.
Rachel LopezFrom the Departments of Anesthesiology.
Christoph D RauFrom the Departments of Anesthesiology.
Jessica WangMedicine.
Stanley F NelsonHuman Genetics.
Yong WuFrom the Departments of Anesthesiology.
Enrico StefaniFrom the Departments of Anesthesiology.
Aldons J LusisMedicine, Human Genetics, Microbiology, Immunology and Molecular Genetics, and.
Yibin WangFrom the Departments of Anesthesiology, Medicine, Physiology, David Geffen School of Medicine at UCLA, Los Angeles, California 90095 and.
Siavash K KurdistaniBiological Chemistry.
Sarah Franklinthe Cardiovascular Research and Training Institute, University of Utah, Salt Lake City, Utah 84112.
Thomas M VondriskaFrom the Departments of Anesthesiology, Medicine, Physiology, David Geffen School of Medicine at UCLA, Los Angeles, California 90095 and tvondriska@mednet.ucla.edu.
University of California, Los Angeles · USUniversity of Utah · US

Funding

University of Michigan Postbaccalaureate Research Education Program (UM PREP)R25GM086262 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ALLEN, BENJAMIN · 2009 to 2024
$6.1M
Dynamics of Cardiac Nuclei in Heart DiseaseR01HL105699 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI VONDRISKA, THOMAS M. · 2011 to 2025
$5.0M
Systems Approach to Unraveling the Genetic Basis of Heart FailureR01HL114437 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DENG, MARIO C., KARMA, ALAIN S · 2013 to 2016
$4.7M
Epigenomic Mechanisms of Heart FailureR01HL129639 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI VONDRISKA, THOMAS M. · 2015 to 2018
$2.6M
A Systems Approach to Dissect Genetic Basis of Heart FailureR01HL123295 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LUSIS, ALDONS JAKE, WANG, YIBIN · 2014 to 2017
$2.6M
Training in Molecular, Cellular &Integrative PhysiologyT32GM065823 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TIDBALL, JAMES G · 2003 to 2017
$2.1M
Systems Analysis of Cardiac Chromatin StructureR01HL115238 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI VONDRISKA, THOMAS M. · 2012 to 2016
$1.9M
NHLBI NIH HHS R01 HL105699NHLBI NIH HHS R01 HL114437NHLBI NIH HHS R01 HL115238NHLBI NIH HHS R01 HL123295NHLBI NIH HHS R01 HL129639NIGMS NIH HHS R25 GM086262NIGMS NIH HHS T32 GM065823
6 · The paper itself

Abstract

Transcriptome remodeling in heart disease occurs through the coordinated actions of transcription factors, histone modifications, and other chromatin features at pathology-associated genes. The extent to which genome-wide chromatin reorganization also contributes to the resultant changes in gene expression remains unknown. We examined the roles of two chromatin structural proteins, Ctcf (CCCTC-binding factor) and Hmgb2 (high mobility group protein B2), in regulating pathologic transcription and chromatin remodeling. Our data demonstrate a reciprocal relationship between Hmgb2 and Ctcf in controlling aspects of chromatin structure and gene expression. Both proteins regulate each others' expression as well as transcription in cardiac myocytes; however, only Hmgb2 does so in a manner that involves global reprogramming of chromatin accessibility. We demonstrate that the actions of Hmgb2 on local chromatin accessibility are conserved across genomic loci, whereas the effects on transcription are loci-dependent and emerge in concert with histone modification and other chromatin features. Finally, although both proteins share gene targets, Hmgb2 and Ctcf, neither binds these genes simultaneously nor do they physically colocalize in myocyte nuclei. Our study uncovers a previously unknown relationship between these two ubiquitous chromatin proteins and provides a mechanistic explanation for how Hmgb2 regulates gene expression and cellular phenotype. Furthermore, we provide direct evidence for structural remodeling of chromatin on a genome-wide scale in the setting of cardiac disease.

Indexed as

AnimalsCCCTC-Binding FactorChromatinEpigenomicsFemaleGene Expression RegulationHEK293 CellsHeLa CellsHMGB2 ProteinHumansMiceMyocardiumMyocytes, CardiacRepressor ProteinsCCCTC-Binding FactorChromatinCTCF protein, humanCtcf protein, mouseHMGB2 ProteinRepressor Proteinscardiac hypertrophychromatin regulationCtcfepigeneticsgene regulationheart failureHmgb2

Identifiers

PMID27226577
PMCPMC4957031
OpenAlexW2401430983

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.