Evidence map›Paper›PMID 27226550›Full record

ArticleThe Journal of biological chemistry2016

Biochemical Characterization of the Human Mitochondrial Replicative Twinkle Helicase: SUBSTRATE SPECIFICITY, DNA BRANCH MIGRATION, AND ABILITY TO OVERCOME BLOCKADES TO DNA UNWINDING.

Irfan Khan, Jack D Crouch, Sanjay Kumar Bharti, Joshua A Sommers, Sean M Carney, Elena Yakubovskaya, Miguel Garcia-Diaz, Michael A Trakselis, Robert M Brosh

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 25 citations in OpenAlex.

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  9. Structural insight and characterization of human Twinkle helicase in mitochondrial disease.Proceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Irfan KhanLaboratory of Molecular Gerontology, NIA, National Institutes of Health, Baltimore, Maryland 21224.
Jack D CrouchLaboratory of Molecular Gerontology, NIA, National Institutes of Health, Baltimore, Maryland 21224.
Sanjay Kumar BhartiLaboratory of Molecular Gerontology, NIA, National Institutes of Health, Baltimore, Maryland 21224.
Joshua A SommersLaboratory of Molecular Gerontology, NIA, National Institutes of Health, Baltimore, Maryland 21224.
Sean M CarneyMolecular Biophysics and Structural Biology Program, University of Pittsburgh, Pittsburgh, Pennsylvania 15260.
Elena YakubovskayaDepartment of Pharmacological Sciences, Stony Brook University, Stony Brook, New York 11794-8651.
Miguel Garcia-DiazDepartment of Pharmacological Sciences, Stony Brook University, Stony Brook, New York 11794-8651.
Michael A TrakselisMolecular Biophysics and Structural Biology Program, University of Pittsburgh, Pittsburgh, Pennsylvania 15260,; Department of Chemistry and Biochemistry, Baylor University, Waco, Texas 76798.
Robert M BroshLaboratory of Molecular Gerontology, NIA, National Institutes of Health, Baltimore, Maryland 21224,. Electronic address: broshr@mail.nih.gov.
National Institute on Aging · USNational Institutes of Health · USStony Brook University · USBaylor University · USUniversity of Pittsburgh · US

Funding

Roles Of DNA Helicases In Pathways Required For Maintenance Of Genomic StabilityZIAAG000741 · NIA · NATIONAL INSTITUTE ON AGING · PI BROSH, ROBERT · 2009 to 2025
$7.6M
Mechanisms of mitochondrial transcriptionR01GM100021 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI GARCIA-DIAZ, MIGUEL · 2012 to 2016
$1.5M
NIGMS NIH HHS R01 GM100021
6 · The paper itself

Abstract

Mutations in the c10orf2 gene encoding the human mitochondrial DNA replicative helicase Twinkle are linked to several rare genetic diseases characterized by mitochondrial defects. In this study, we have examined the catalytic activity of Twinkle helicase on model replication fork and DNA repair structures. Although Twinkle behaves as a traditional 5' to 3' helicase on conventional forked duplex substrates, the enzyme efficiently dissociates D-loop DNA substrates irrespective of whether it possesses a 5' or 3' single-stranded tailed invading strand. In contrast, we report for the first time that Twinkle branch-migrates an open-ended mobile three-stranded DNA structure with a strong 5' to 3' directionality preference. To determine how well Twinkle handles potential roadblocks to mtDNA replication, we tested the ability of the helicase to unwind substrates with site-specific oxidative DNA lesions or bound by the mitochondrial transcription factor A. Twinkle helicase is inhibited by DNA damage in a unique manner that is dependent on the type of oxidative lesion and the strand in which it resides. Novel single molecule FRET binding and unwinding assays show an interaction of the excluded strand with Twinkle as well as events corresponding to stepwise unwinding and annealing. TFAM inhibits Twinkle unwinding, suggesting other replisome proteins may be required for efficient removal. These studies shed new insight on the catalytic functions of Twinkle on the key DNA structures it would encounter during replication or possibly repair of the mitochondrial genome and how well it tolerates potential roadblocks to DNA unwinding.

Indexed as

DNADNA DamageDNA HelicasesFluorescence Resonance Energy TransferHumansMitochondrial ProteinsOxidation-ReductionSubstrate SpecificityDNADNA HelicasesMitochondrial ProteinsTWNK protein, humanbranch migrationDNA helicaseDNA repairDNA replicationgenetic diseasehelicasemitochondriaTwinkle

Identifiers

PMID27226550
PMCPMC4933186
OpenAlexW2355338806

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.