Evidence map›Paper›PMID 27225461›Full record

ArticleJournal of microbiology (Seoul, Korea)2016

Purification, crystallization, and preliminary X-ray crystallographic analysis of the Group III chaperonin from Carboxydothermus hydrogenoformans.

Young Jun An, Sara E Rowland, Frank T Robb, Sun-Shin Cha

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of microbiology (Seoul, Korea), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 4 institutions in 2 countries.

Young Jun AnKorea Institute of Ocean Science and Technology, Ansan, 15627, Republic of Korea.
Sara E RowlandInstitute of Marine and Environmental Technology, Baltimore, MD, 21202, USA.
Frank T RobbInstitute of Marine and Environmental Technology, Baltimore, MD, 21202, USA.
Sun-Shin ChaDepartment of Chemistry and Nano Science, Ewha Womans University, Seoul, 03760, Republic of Korea. chajung@ewha.ac.kr.
Advanced Bioscience Laboratories (United States) · USEwha Womans University · KRInstitute for Bioscience and Biotechnology ResearchKorea Institute of Ocean Science and Technology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chaperonins (CPNs) are megadalton sized ATP-dependent nanomachines that facilitate protein folding through complex cycles of complex allosteric articulation. They consist of two back-to-back stacked multisubunit rings. CPNs are usually classified into Group I and Group II. Here, we report the crystallization of both the AMPPNP (an ATP analogue) and ADP bound forms of a novel CPN, classified as belonging to a third Group, recently discovered in the extreme thermophile Carboxydothermus hydrogenoformans. Crystals of the two forms were grown by the vapor batch crystallization method at 295 K. Crystals of the Ch-CPN/AMPPNP complex diffracted to 3.0 Å resolution and belonged to the space group P422, with unit-cell parameters a = b = 186.166, c = 160.742 Å. Assuming the presence of four molecules in the asymmetric unit, the solvent content was estimated to be about 60.02%. Crystals of the Ch-CPN/ADP complex diffracted to 4.0 Å resolution and belonged to the space group P4212, with unit-cell parameters a = b = 209.780, c = 169.813Å. Assuming the presence of four molecules in the asymmetric unit, the solvent content was estimated to be about 70.19%.

Indexed as

Adenosine DiphosphateAdenosine TriphosphateAmino Acid SequenceBacterial ProteinsChaperoninsCrystallography, X-RayModels, MolecularMolecular Sequence DataSequence AlignmentThermoanaerobacteriumAdenosine DiphosphateAdenosine TriphosphateBacterial ProteinsChaperoninsAT-Pfueled nanomachinecrystallizationGroup III chaperoninsprotein folding

Identifiers

PMID27225461
OpenAlexW2398246393

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.