Evidence map›Paper›PMID 27225460›Full record

ArticleJournal of microbiology (Seoul, Korea)2016

Identification of D-amino acid dehydrogenase as an upstream regulator of the autoinduction of a putative acyltransferase in Corynebacterium glutamicum.

Jung-Hoon Lee, Yong-Jae Kim, Hee-Sung Shin, Heung-Shick Lee, Shouguang Jin, Un-Hwan Ha

Abstract read
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Article in Journal of microbiology (Seoul, Korea), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Jung-Hoon LeeDepartment of Biotechnology and Bioinformatics, Korea University, Sejong, 30019, Republic of Korea.
Yong-Jae KimDepartment of Biotechnology and Bioinformatics, Korea University, Sejong, 30019, Republic of Korea.
Hee-Sung ShinDepartment of Biotechnology and Bioinformatics, Korea University, Sejong, 30019, Republic of Korea.
Heung-Shick LeeDepartment of Biotechnology and Bioinformatics, Korea University, Sejong, 30019, Republic of Korea.
Shouguang JinDepartment of Molecular Genetics and Microbiology, University of Florida, Gainesville, FL, 32610, USA.
Un-Hwan HaDepartment of Biotechnology and Bioinformatics, Korea University, Sejong, 30019, Republic of Korea. haunhwan@korea.ac.kr.
Korea University · KRUniversity of Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Expression of a putative acyltransferase encoded by NCgl- 0350 of Corynebacterium glutamicum is induced by cell-free culture fluids obtained from stationary-phase growth of both C. glutamicum and Pseudomonas aeruginosa, providing evidence for interspecies communication. Here, we further confirmed that such communication occurs by showing that acyltransferase expression is induced by culture fluid obtained from diverse Gram-negative and -positive bacterial strains, including Escherichia coli, Salmonella Typhimurium, Bacillus subtilis, Staphylococcus aureus, Mycobacterium sp. strain JC1, and Mycobacterium smegmatis. A homologous acyltransferase encoded by PA5238 of P. aeruginosa was also induced by fluids obtained from P. aeruginosa as well as other bacterial strains, as observed for NCgl0350 of C. glutamicum. Because C. glutamicum is difficult to study using molecular approaches, the homologous gene PA5238 of P. aeruginosa was used to identify PA5309 as an upstream regulator of expression. A homologous D-amino acid dehydrogenase encoded by NCgl- 2909 of C. glutamicum was cloned based on amino acid similarity to PA5309, and its role in the regulation of NCgl0350 expression was confirmed. Moreover, NCgl2909 played positive roles in growth of C. glutamicum. Thus, we identified a D-amino acid dehydrogenase as an upstream regulator of the autoinduction of a putative acyltransferase in C. glutamicum.

Indexed as

Gene Expression Regulation, EnzymologicAcyltransferasesBacterial ProteinsCorynebacterium glutamicumD-Amino-Acid OxidaseGene Expression Regulation, BacterialAcyltransferasesBacterial ProteinsD-Amino-Acid OxidaseacyltransferaseautoinductionCorynebacterium glutamicumD-amino acid dehydrogenasePseudomonas aeruginosa

Identifiers

PMID27225460
OpenAlexW2396190778

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.