Evidence map›Paper›PMID 27224492›Full record

ArticleBiophysical journal2016

Phenotypic Diversity Using Bimodal and Unimodal Expression of Stress Response Proteins.

Javier Garcia-Bernardo, Mary J Dunlop

Erratum issuedAbstract read
In one paragraph

Article in Biophysical journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Mechanisms of protein evolution.Protein science : a publication of the Protein Society · 2022
    Review
  3. The Growth Promotion of Peppers (Microorganisms · 2020
    Article
  4. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

2 authors.

Javier Garcia-BernardoDepartment of Computer Science, University of Vermont, Burlington, Vermont.
Mary J DunlopSchool of Engineering, University of Vermont, Burlington, Vermont. Electronic address: mjdunlop@uvm.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Populations of cells need to express proteins to survive the sudden appearance of stressors. However, these mechanisms may be taxing. Populations can introduce diversity, allowing individual cells to stochastically switch between fast-growing and stress-tolerant states. One way to achieve this is to use genetic networks coupled with noise to generate bimodal distributions with two distinct subpopulations, each adapted to a stress condition. Another survival strategy is to rely on random fluctuations in gene expression to produce continuous, unimodal distributions of the stress response protein. To quantify the environmental conditions where bimodal versus unimodal expression is beneficial, we used a differential evolution algorithm to evolve optimal distributions of stress response proteins given environments with sudden fluctuations between low and high stress. We found that bimodality evolved for a large range of environmental conditions. However, we asked whether these findings were an artifact of considering two well-defined stress environments (low and high stress). As noise in the environment increases, or when there is an intermediate environment (medium stress), the benefits of bimodality decrease. Our results indicate that under realistic conditions, a continuum of resistance phenotypes generated through a unimodal distribution is sufficient to ensure survival without a high cost to the population.

Indexed as

EnvironmentModels, BiologicalPhenotypeAlgorithmsBiodiversityBiological EvolutionGene ExpressionGene Expression RegulationGene Regulatory NetworksGenetic FitnessHeat-Shock ProteinsStochastic ProcessesStress, PhysiologicalHeat-Shock Proteins

Identifiers

PMID27224492
PMCPMC4881231

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.