Evidence map›Paper›PMID 27224062›Full record

ArticlePloS one2016

SDCCAG8 Interacts with RAB Effector Proteins RABEP2 and ERC1 and Is Required for Hedgehog Signaling.

Rannar Airik, Markus Schueler, Merlin Airik, Jang Cho, Kelsey A Ulanowicz, Jonathan D Porath, Toby W Hurd, Simon Bekker-Jensen, Jacob M Schrøder, Jens S Andersen and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Rannar AirikDepartment of Medicine, Division of Nephrology, Boston Children's Hospital, Boston, Massachusetts, United States of America.ORCID 0000-0002-7055-6325
Markus SchuelerDepartment of Medicine, Division of Nephrology, Boston Children's Hospital, Boston, Massachusetts, United States of America.
Merlin AirikDepartment of Medicine, Division of Nephrology, Boston Children's Hospital, Boston, Massachusetts, United States of America.
Jang ChoDepartment of Medicine, Division of Nephrology, Boston Children's Hospital, Boston, Massachusetts, United States of America.
Kelsey A UlanowiczDepartment of Pediatrics, Division of Nephrology, Children's Hospital of Pittsburgh of UPMC, Pittsburgh, Pennsylvania, United States of America.
Jonathan D PorathDepartment of Medicine, Division of Nephrology, Boston Children's Hospital, Boston, Massachusetts, United States of America.
Toby W HurdMedical Research Council Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, United Kingdom.
Simon Bekker-JensenNNF Center for Protein Research, University of Copenhagen, Faculty of Health Sciences, Copenhagen, Denmark.
Jacob M SchrøderDepartment of Biochemistry and Molecular Biology; University of Southern Denmark, Odense M, Denmark.
Jens S AndersenDepartment of Biochemistry and Molecular Biology; University of Southern Denmark, Odense M, Denmark.
Friedhelm HildebrandtDepartment of Medicine, Division of Nephrology, Boston Children's Hospital, Boston, Massachusetts, United States of America.
Boston Children's Hospital · USUniversity of Southern Denmark · DKChildren's Hospital of Pittsburgh · USInstitute of Genetics and Cancer · GBUniversity of Copenhagen · DK

Funding

Novel genetics, pathobiology & therapy of nephronophthisis-related ciliopathiesR01DK068306 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HILDEBRANDT, FRIEDHELM · 2004 to 2022
$6.6M
Mouse Neurodevelopmental Behavior CoreU54HD090255 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI KUNKEL, LOUIS M · 2016 to 2020
$5.2M
Functional characterization of the gene NPHP4R01DK064614 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HILDEBRANDT, FRIEDHELM · 2004 to 2007
$1.3M
The role of DNA damage response signaling in chronic kidney diseaseR00DK099434 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI AIRIK, RANNAR · 2015 to 2017
$733k
The role of DNA damage response signaling in chronic kidney diseaseK99DK099434 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI AIRIK, RANNAR · 2013 to 2014
$180k
Howard Hughes Medical InstituteNICHD NIH HHS U54 HD090255NIDDK NIH HHS K99 DK099434NIDDK NIH HHS R00 DK099434NIDDK NIH HHS R01 DK064614NIDDK NIH HHS R01 DK068306
6 · The paper itself

Abstract

Recessive mutations in the SDCCAG8 gene cause a nephronophthisis-related ciliopathy with Bardet-Biedl syndrome-like features in humans. Our previous characterization of the orthologous Sdccag8gt/gt mouse model recapitulated the retinal-renal disease phenotypes and identified impaired DNA damage response signaling as an underlying disease mechanism in the kidney. However, several other phenotypic and mechanistic features of Sdccag8gt/gt mice remained unexplored. Here we show that Sdccag8gt/gt mice exhibit developmental and structural abnormalities of the skeleton and limbs, suggesting impaired Hedgehog (Hh) signaling. Indeed, cell culture studies demonstrate the requirement of SDCCAG8 for ciliogenesis and Hh signaling. Using an affinity proteomics approach, we demonstrate that SDCCAG8 interacts with proteins of the centriolar satellites (OFD1, AZI1), of the endosomal sorting complex (RABEP2, ERC1), and with non-muscle myosin motor proteins (MYH9, MYH10, MYH14) at the centrosome. Furthermore, we show that RABEP2 localization at the centrosome is regulated by SDCCAG8. siRNA mediated RABEP2 knockdown in hTERT-RPE1 cells leads to defective ciliogenesis, indicating a critical role for RABEP2 in this process. Together, this study identifies several centrosome-associated proteins as novel SDCCAG8 interaction partners, and provides new insights into the function of SDCCAG8 at this structure.

Indexed as

Signal TransductionAdaptor Proteins, Signal TransducingAnimalsAutoantigensCentriolesGene Knockdown TechniquesHedgehog ProteinsHEK293 CellsHumansMiceMice, TransgenicMyosinsNeoplasm ProteinsVesicular Transport ProteinsAdaptor Proteins, Signal TransducingAutoantigensHedgehog ProteinsMyosinsNeoplasm ProteinsSdccag8 protein, mouseVesicular Transport Proteins

Identifiers

PMID27224062
PMCPMC4880186
OpenAlexW2405448487

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.