Evidence map›Paper›PMID 27223277›Full record

ArticleInternational journal of molecular sciences2016

A Novel Technique to Detect EGFR Mutations in Lung Cancer.

Yuanbin Liu, Ting Lei, Zhiyu Liu, Yanbin Kuang, Jianxin Lyu, Qi Wang

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 32 citations in OpenAlex.

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  10. A duplex probe-directed recombinase amplification assay for detection of single nucleotide polymorphisms on 8q24 associated with prostate cancer.Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologica · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Yuanbin LiuDepartment of Respiratory Medicine, the Second Hospital, Dalian Medical University, Dalian 116023, China. ybliu_301@163.com.
Ting LeiDepartment of Thoracic Surgery, the Second Hospital of Dalian Medical University, Dalian 116023, China. leiting0612@sina.com.
Zhiyu LiuDepartment of Urinary Surgery, the Second Hospital, Dalian Medical University, Dalian 116023, China. letter89@163.com.
Yanbin KuangDepartment of Respiratory Medicine, the Second Hospital, Dalian Medical University, Dalian 116023, China. kybkyb2@163.com.
Jianxin LyuKey Laboratory of Laboratory Medicine, Ministry of Education, Zhejiang Provincial Key Laboratory of Medical Genetics, Wenzhou Medical University, Wenzhou 325035, China. jxlu313@163.com.
Qi WangDepartment of Respiratory Medicine, the Second Hospital, Dalian Medical University, Dalian 116023, China. wqdlmu@163.com.
Dalian Medical University · CNWenzhou Medical University · CNSecond Affiliated Hospital of Dalian Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Epidermal growth factor receptor (EGFR) gene mutations occur in multiple human cancers; therefore, the detection of EGFR mutations could lead to early cancer diagnosis. This study describes a novel EGFR mutation detection technique. Compared to direct DNA sequencing detection methods, this method is based on allele-specific amplification (ASA), recombinase polymerase amplification (RPA), peptide nucleic acid (PNA), and SYBR Green I (SYBR), referred to as the AS-RPA-PNA-SYBR (ARPS) system. The principle of this technique is based on three continuous steps: ASA or ASA combined with PNA to prevent non-target sequence amplification (even single nucleotide polymorphisms, SNPs), the rapid amplification advantage of RPA, and appropriate SYBR Green I detection (the samples harboring EGFR mutations show a green signal). Using this method, the EGFR 19Del(2) mutation was detected in 5 min, while the EGFR L858R mutation was detected in 10 min. In this study, the detection of EGFR mutations in clinical samples using the ARPS system was compatible with that determined by polymerase chain reaction (PCR) and DNA sequencing methods. Thus, this newly developed methodology that uses the ARPS system with appropriate primer sets is a rapid, reliable, and practical way to assess EGFR mutations in clinical samples.

Indexed as

MutationAllelesBenzothiazolesCell Line, TumorDiaminesDNA, NeoplasmEarly Detection of CancerErbB ReceptorsGenetic TestingHumansLung NeoplasmsOrganic ChemicalsPoint-of-Care SystemsPolymerase Chain ReactionQuinolinesRecombinasesBenzothiazolesDiaminesDNA, NeoplasmEGFR protein, humanErbB ReceptorsOrganic ChemicalsQuinolinesRecombinasesSYBR Green IASAEGFR mutationnovel methodologypoint-of-care test (POCT)RPASYBR

Identifiers

PMID27223277
PMCPMC4881608
OpenAlexW2400866761

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.