Evidence map›Paper›PMID 27222580›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Cellular folding pathway of a metastable serpin.

Kshama Chandrasekhar, Haiping Ke, Ning Wang, Theresa Goodwin, Lila M Gierasch, Anne Gershenson, Daniel N Hebert

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
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  9. Review
  10. Review
  11. Article
  12. Serpin neuropathology in the P497S UBQLN2 mouse model of ALS/FTD.Brain pathology (Zurich, Switzerland) · 2021
    Article
  13. Review
  14. The metastable states of proteins.Protein science : a publication of the Protein Society · 2020
    Review
  15. Article
  16. Review
  17. Article
  18. On the folding of a structurally complex protein to its metastable active state.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Kshama ChandrasekharDepartment of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, MA 01003;
Haiping KeDepartment of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, MA 01003;
Ning WangDepartment of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, MA 01003; Program in Molecular and Cellular Biology, University of Massachusetts, Amherst, MA 01003;
Theresa GoodwinDepartment of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, MA 01003;
Lila M GieraschDepartment of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, MA 01003; Program in Molecular and Cellular Biology, University of Massachusetts, Amherst, MA 01003; Department of Chemistry, University of Massachusetts, Amherst, MA 01003.
Anne GershensonDepartment of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, MA 01003; Program in Molecular and Cellular Biology, University of Massachusetts, Amherst, MA 01003;
Daniel N HebertDepartment of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, MA 01003; Program in Molecular and Cellular Biology, University of Massachusetts, Amherst, MA 01003; dhebert@biochem.umass.edu.
University of Massachusetts Amherst · US

Funding

Protein folding in the cell: Challenges and coping mechanisms Administrative Supplement for Equipment PurchaseR35GM118161 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI GIERASCH, LILA M · 2016 to 2025
$5.5M
Cellular protein maturation and degradationR01GM086874 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI RAUCH, JENNIFER NICOLE · 2009 to 2025
$4.5M
Post-Reductionist Protein Folding: Determining the In-cell Folding Energy LandscaR01GM094848 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI GERSHENSON, ANNE, GIERASCH, LILA M · 2010 to 2013
$1.3M
NIGMS NIH HHS R01 GM086874NIGMS NIH HHS R01 GM094848NIGMS NIH HHS R35 GM118161
6 · The paper itself

Abstract

Although proteins generally fold to their thermodynamically most stable state, some metastable proteins populate higher free energy states. Conformational changes from metastable higher free energy states to lower free energy states with greater stability can then generate the work required to perform physiologically important functions. However, how metastable proteins fold to these higher free energy states in the cell and avoid more stable but inactive conformations is poorly understood. The serpin family of metastable protease inhibitors uses large conformational changes that are downhill in free energy to inhibit target proteases by pulling apart the protease active site. The serpin antithrombin III (ATIII) targets thrombin and other proteases involved in blood coagulation, and ATIII misfolding can thus lead to thrombosis and other diseases. ATIII has three disulfide bonds, two near the N terminus and one near the C terminus. Our studies of ATIII in-cell folding reveal a surprising, biased order of disulfide bond formation, with early formation of the C-terminal disulfide, before formation of the N-terminal disulfides, critical for folding to the active, metastable state. Early folding of the predominantly β-sheet ATIII domain in this two-domain protein constrains the reactive center loop (RCL), which contains the protease-binding site, ensuring that the RCL remains accessible. N-linked glycans and carbohydrate-binding molecular chaperones contribute to the efficient folding and secretion of functional ATIII. The inability of a number of disease-associated ATIII variants to navigate the folding reaction helps to explain their disease phenotypes.

Indexed as

AnimalsAntithrombin IIICHO CellsCricetulusDisulfidesHumansMutationProtein ConformationProtein FoldingAntithrombin IIIDisulfidesantithrombincellular protein foldingendoplasmic reticulumserpinsthrombosis

Identifiers

PMID27222580
PMCPMC4988602
OpenAlexW2405714084

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.