Evidence map›Paper›PMID 27221344›Full record

ArticleNature communications2016

A conserved leucine occupies the empty substrate site of LeuT in the Na(+)-free return state.

Lina Malinauskaite, Saida Said, Caglanur Sahin, Julie Grouleff, Azadeh Shahsavar, Henriette Bjerregaard, Pernille Noer, Kasper Severinsen, Thomas Boesen, Birgit Schiøtt and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Article
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  4. Article
  5. Article
  6. Identification of the potassium-binding site in serotonin transporter.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  7. Conformational free-energy landscapes of a NaProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Exploring the KeLife · 2024
    Article
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  11. Review
  12. Article
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  15. Review
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  17. Article
  18. Heteromeric Solute Carriers: Function, Structure, Pathology and Pharmacology.Advances in experimental medicine and biology · 2021
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Lina MalinauskaiteDanish Research Institute of Translational Neuroscience-DANDRITE, Nordic-EMBL Partnership for Molecular Medicine, Department of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej 10C, Aarhus C DK-8000, Denmark.
Saida SaidTranslational Neuropsychiatry Unit, Department of Clinical Medicine, Aarhus University, Skovagervej 2, Risskov DK-8240, Denmark.
Caglanur SahinDanish Research Institute of Translational Neuroscience-DANDRITE, Nordic-EMBL Partnership for Molecular Medicine, Department of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej 10C, Aarhus C DK-8000, Denmark.
Julie GrouleffinSPIN and iNANO centers, Department of Chemistry, Aarhus University, Langelandsgade 140, Aarhus C DK-8000, Denmark.
Azadeh ShahsavarDanish Research Institute of Translational Neuroscience-DANDRITE, Nordic-EMBL Partnership for Molecular Medicine, Department of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej 10C, Aarhus C DK-8000, Denmark.
Henriette BjerregaardTranslational Neuropsychiatry Unit, Department of Clinical Medicine, Aarhus University, Skovagervej 2, Risskov DK-8240, Denmark.
Pernille NoerTranslational Neuropsychiatry Unit, Department of Clinical Medicine, Aarhus University, Skovagervej 2, Risskov DK-8240, Denmark.
Kasper SeverinsenTranslational Neuropsychiatry Unit, Department of Clinical Medicine, Aarhus University, Skovagervej 2, Risskov DK-8240, Denmark.
Thomas BoesenDanish Research Institute of Translational Neuroscience-DANDRITE, Nordic-EMBL Partnership for Molecular Medicine, Department of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej 10C, Aarhus C DK-8000, Denmark.
Birgit SchiøttinSPIN and iNANO centers, Department of Chemistry, Aarhus University, Langelandsgade 140, Aarhus C DK-8000, Denmark.
Steffen SinningTranslational Neuropsychiatry Unit, Department of Clinical Medicine, Aarhus University, Skovagervej 2, Risskov DK-8240, Denmark.
Poul NissenDanish Research Institute of Translational Neuroscience-DANDRITE, Nordic-EMBL Partnership for Molecular Medicine, Department of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej 10C, Aarhus C DK-8000, Denmark.
Aarhus University · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial members of the neurotransmitter:sodium symporter (NSS) family perform Na(+)-dependent amino-acid uptake and extrude H(+) in return. Previous NSS structures represent intermediates of Na(+)/substrate binding or intracellular release, but not the inward-to-outward return transition. Here we report crystal structures of Aquifex aeolicus LeuT in an outward-oriented, Na(+)- and substrate-free state likely to be H(+)-occluded. We find a remarkable rotation of the conserved Leu25 into the empty substrate-binding pocket and rearrangements of the empty Na(+) sites. Mutational studies of the equivalent Leu99 in the human serotonin transporter show a critical role of this residue on the transport rate. Molecular dynamics simulations show that extracellular Na(+) is blocked unless Leu25 is rotated out of the substrate-binding pocket. We propose that Leu25 facilitates the inward-to-outward transition by compensating a Na(+)- and substrate-free state and acts as the gatekeeper for Na(+) binding that prevents leak in inward-outward return transitions.

Indexed as

Amino Acid SequenceAmino Acid Transport SystemsEscherichia coliHEK293 CellsHumansLeucineMolecular Dynamics SimulationPlasma Membrane Neurotransmitter Transport ProteinsProtein ConformationSodiumAmino Acid Transport SystemsLeucinePlasma Membrane Neurotransmitter Transport ProteinsSodium

Identifiers

PMID27221344
PMCPMC4894957
OpenAlexW2342502358

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.