Evidence map›Paper›PMID 27220398›Full record

ArticleInternational journal of molecular medicine2016

Identification of novel potent human testis-specific and bromodomain-containing protein (BRDT) inhibitors using crystal structure-based virtual screening.

Nana Gao, Jixia Ren, Li Hou, Yue Zhou, Ling Xin, Jiedong Wang, Heming Yu, Yong Xie, Huiping Wang

Open access · hybridAbstract read
In one paragraph

Article in International journal of molecular medicine, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 10 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Nana GaoCentral Laboratory, Beijing Shijitan Hospital Affiliated to Capital Medical University, Beijing 100038, P.R. China.
Jixia RenInstitute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Haidian, Beijing 100193, P.R. China.
Li HouDepartment of Reproductive Immunology and Pharamacology, National Research Institute for Family Planning, Beijing 100081, P.R. China.
Yue ZhouDepartment of Reproductive Immunology and Pharamacology, National Research Institute for Family Planning, Beijing 100081, P.R. China.
Ling XinDepartment of Reproductive Immunology and Pharamacology, National Research Institute for Family Planning, Beijing 100081, P.R. China.
Jiedong WangDepartment of Reproductive Immunology and Pharamacology, National Research Institute for Family Planning, Beijing 100081, P.R. China.
Heming YuDepartment of Reproductive Immunology and Pharamacology, National Research Institute for Family Planning, Beijing 100081, P.R. China.
Yong XieInstitute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Haidian, Beijing 100193, P.R. China.
Huiping WangDepartment of Reproductive Immunology and Pharamacology, National Research Institute for Family Planning, Beijing 100081, P.R. China.
Chinese Academy of Medical Sciences & Peking Union Medical College · CNBeijing Shijitan Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human testis-specific and bromodomain-containing protein (hBRDT) is essential for chromatin remodeling during spermatogenesis and is therefore an attractive target for the discovery of male contraceptive drugs. In this study, pharmacophore modeling was carried out based on the crystal structure of hBRDT in complex with the inhibitor, JQ1. The established pharmacophore model was used as a 3D search query to identify potent hBRDT inhibitors from an in-house chemical database. A molecular docking analysis was carried out to filter the obtained hit compounds. A total of 125 compounds was finally selected based on the ranking order and visual examination. These compounds were further evaluated by a protein-based in vitro assay. Four compounds with new chemical scaffolds were identified to be hBRDT inhibitors. The most active of these compounds, T480, had a half maximal inhibitory concentration (IC50) of 9.02 µM. The detailed analysis of the binding mode of compound T480 provides important information for the further development of novel BRDT inhibitors.

Indexed as

Drug Evaluation, PreclinicalUser-Computer InterfaceBromodomain Containing ProteinsCatalytic DomainCrystallography, X-RayHumansInhibitory Concentration 50Molecular Docking SimulationNuclear ProteinsProtein DomainsBRDT protein, humanBromodomain Containing ProteinsNuclear Proteins

Identifiers

PMID27220398
PMCPMC4899012
OpenAlexW2395850524

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.