Evidence map›Paper›PMID 27218454›Full record

ArticleeLife2016

Comparative genomics explains the evolutionary success of reef-forming corals.

Debashish Bhattacharya, Shobhit Agrawal, Manuel Aranda, Sebastian Baumgarten, Mahdi Belcaid, Jeana L Drake, Douglas Erwin, Sylvian Foret, Ruth D Gates, David F Gruber and 25 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
32.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 212 citations in OpenAlex.

  1. Article
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  5. The genome of the reef-building coralGigaByte (Hong Kong, China) · 2026
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  9. Review
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  13. Complete mitochondrial genome and phylogenetic analysis ofMitochondrial DNA. Part B, Resources · 2025
    Article
  14. Article
  15. Article
  16. Article
  17. Article
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  20. Article

39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors at 16 institutions in 7 countries.

Debashish BhattacharyaDepartment of Ecology, Evolution and Natural Resources, Rutgers University, New Brunswick, United States.
Shobhit AgrawalRed Sea Research Center, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Manuel ArandaRed Sea Research Center, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Sebastian BaumgartenRed Sea Research Center, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Mahdi BelcaidHawaii Institute of Marine Biology, Kaneohe, United States.
Jeana L DrakeEnvironmental Biophysics and Molecular Ecology Program, Department of Marine and Coastal Sciences, Rutgers University, New Brunswick, United States.
Douglas ErwinSmithsonian Institution, National Museum of Natural History, Washington, United States.
Sylvian ForetARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Australia.
Ruth D GatesHawaii Institute of Marine Biology, Kaneohe, United States.
David F GruberAmerican Museum of Natural History, Sackler Institute for Comparative Genomics, New York, United States.
Bishoy KamelDepartment of Biology, Mueller Lab, Penn State University, University Park, United States.ORCID 0000-0003-2934-3827
Michael P LesserSchool of Marine Science and Ocean Engineering, University of New Hampshire, Durham, United States.
Oren LevyThe Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat Gam, Israel.
Yi Jin LiewRed Sea Research Center, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Matthew MacManesDepartment of Molecular, Cellular and Biomedical Sciences, University of New Hampshire, Durham, United States.ORCID 0000-0002-2368-6960
Tali MassEnvironmental Biophysics and Molecular Ecology Program, Department of Marine and Coastal Sciences, Rutgers University, New Brunswick, United States.
Monica MedinaDepartment of Biology, Mueller Lab, Penn State University, University Park, United States.
Shaadi MehrAmerican Museum of Natural History, Sackler Institute for Comparative Genomics, New York, United States.
Eli MeyerDepartment of Integrative Biology, Oregon State University, Corvallis, United States.
Dana C PriceDepartment of Plant Biology and Pathology, Rutgers University, New Brunswick, United States.
Hollie M PutnamHawaii Institute of Marine Biology, Kaneohe, United States.
Huan QiuDepartment of Ecology, Evolution and Natural Resources, Rutgers University, New Brunswick, United States.
Chuya ShinzatoMarine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan.
Eiichi ShoguchiMarine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan.
Alexander J StokesLaboratory of Experimental Medicine and Department of Cell and Molecular Biology, John A. Burns School of Medicine, Honolulu, United States.ORCID 0000-0002-3526-4685
Sylvie TambuttéCentre Scientifique de Monaco, Quai Antoine Ier, Monaco.
Dan TchernovMarine Biology Department, The Leon H. Charney School of Marine Sciences, University of Haifa, Mt. Carmel, Israel.
Christian R VoolstraRed Sea Research Center, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.ORCID 0000-0003-4555-3795
Nicole WagnerDepartment of Ecology, Evolution and Natural Resources, Rutgers University, New Brunswick, United States.
Charles W WalkerDepartment of Molecular, Cellular and Biomedical Sciences, University of New Hampshire, Durham, United States.
Andreas Pm WeberInstitute of Plant Biochemistry, Heinrich-Heine-Universität, Düsseldorf, Germany.
Virginia WeisDepartment of Integrative Biology, Oregon State University, Corvallis, United States.
Ehud ZelzionDepartment of Ecology, Evolution and Natural Resources, Rutgers University, New Brunswick, United States.
Didier ZoccolaCentre Scientifique de Monaco, Quai Antoine Ier, Monaco.ORCID 0000-0002-1524-8098
Paul G FalkowskiEnvironmental Biophysics and Molecular Ecology Program, Department of Marine and Coastal Sciences, Rutgers University, New Brunswick, United States.ORCID 0000-0002-2353-1969
Rutgers, The State University of New Jersey · USKing Abdullah University of Science and Technology · SAUniversity of Hawaii System · USUniversity of New Hampshire · USOkinawa Institute of Science and Technology Graduate University · JPOregon State University · USPennsylvania State University · USAmerican Museum of Natural History · USAustralian National University · AUBar-Ilan University · ILCarmel (Israel) · ILHeinrich Heine University Düsseldorf · DEScientific Centre of Monaco · MCSmithsonian Institution · USThe Graduate Center, CUNY · USUniversity of Hawaiʻi at Mānoa · US

Funding

UH Hilo COP A&RP20GM103466 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI HELEN C TURNER · 2012 to 2026
$60.3M
RESEARCH DESIGN AND BIOSTATISTICS COREU54MD007584 · NIMHD · UNIVERSITY OF HAWAII AT MANOA · PI HEDGES, JERRIS ROBERT, MOKUAU, NOREEN · 2012 to 2018
$21.1M
Chaminade University BRIC ProjectP20MD006084 · NIMHD · CHAMINADE UNIVERSITY OF HONOLULU · PI PLOEGER, BERNARD · 2010 to 2014
$4.0M
NIMHD NIH HHS P20 MD006084
6 · The paper itself

Abstract

Transcriptome and genome data from twenty stony coral species and a selection of reference bilaterians were studied to elucidate coral evolutionary history. We identified genes that encode the proteins responsible for the precipitation and aggregation of the aragonite skeleton on which the organisms live, and revealed a network of environmental sensors that coordinate responses of the host animals to temperature, light, and pH. Furthermore, we describe a variety of stress-related pathways, including apoptotic pathways that allow the host animals to detoxify reactive oxygen and nitrogen species that are generated by their intracellular photosynthetic symbionts, and determine the fate of corals under environmental stress. Some of these genes arose through horizontal gene transfer and comprise at least 0.2% of the animal gene inventory. Our analysis elucidates the evolutionary strategies that have allowed symbiotic corals to adapt and thrive for hundreds of millions of years.

Indexed as

GenomeAdaptation, PhysiologicalAnimalsAnthozoaBiological EvolutionCalcification, PhysiologicCalcium CarbonateCoral ReefsGene Transfer, HorizontalGenomicsHydrogen-Ion ConcentrationLightMetabolic Networks and PathwaysPhotosynthesisPhylogenyReactive Nitrogen SpeciesCalcium CarbonateReactive Nitrogen SpeciesReactive Oxygen Speciesbiomineralizationcoralsecologyevolutionary biologygenomicshorizontal gene transferstress responsesymbiosis

Identifiers

PMID27218454
PMCPMC4878875
OpenAlexW2395058975

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.