Evidence map›Paper›PMID 27218413›Full record

ArticleGenes, chromosomes & cancer2016

Secondary EWSR1 gene abnormalities in SMARCB1-deficient tumors with 22q11-12 regional deletions: Potential pitfalls in interpreting EWSR1 FISH results.

Shih-Chiang Huang, Lei Zhang, Yun-Shao Sung, Chun-Liang Chen, Yu-Chien Kao, Narasimhan P Agaram, Cristina R Antonescu

Open access · greenAbstract read
In one paragraph

Article in Genes, chromosomes & cancer, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. SWI/SNF complex-deficient soft tissue neoplasms: An update.Seminars in diagnostic pathology · 2021
    Review
  9. Review
  10. Article
  11. What is new in epithelioid soft tissue tumors?Virchows Archiv : an international journal of pathology · 2020
    Review
  12. Array-based DNA-methylation profiling in sarcomas with small blue round cell histology provides valuable diagnostic information.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2018
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Shih-Chiang HuangDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY.
Lei ZhangDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY.
Yun-Shao SungDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY.
Chun-Liang ChenDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY.
Yu-Chien KaoDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY.
Narasimhan P AgaramDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY.
Cristina R AntonescuDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY.
Memorial Sloan Kettering Cancer Center · USTaipei Medical University-Shuang Ho Hospital · TW

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
SPORE in Soft Tissue SarcomaP50CA140146 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI SPRIGGS, DAVID R · 2010 to 2014
$11.1M
NCI NIH HHS P30 CA008748NCI NIH HHS P50 CA140146
6 · The paper itself

Abstract

SMARCB1 inactivation occurs in a variety of tumors, being caused by various genetic mechanisms. Since SMARCB1 and EWSR1 genes are located close to each other on chromosome 22, larger SMARCB1 deletions may encompass the EWSR1 locus. Herein, we report four cases with SMARCB1-deletions showing concurrent EWSR1 gene abnormalities by FISH, which lead initially to misinterpretations as EWSR1-rearranged tumors. Our study group included various morphologies: a poorly differentiated chordoma, an extrarenal rhabdoid tumor, a myoepithelial carcinoma, and a proximal-type epithelioid sarcoma. All cases showed loss of SMARCB1 (INI1) by immunohistochemistry (IHC) and displayed characteristic histologic features for the diagnoses. The SMARCB1 FISH revealed homozygous or heterozygous deletions in three and one case, respectively. The co-hybridized EWSR1 probes demonstrated either unbalanced split signals or heterozygous deletion in two cases each. The former suggested bona fide rearrangement, while the latter resembled an unbalanced translocation. However, all the FISH patterns were quite complex and distinct from the simple and uniform split signals seen in typical EWSR1 rearrangements. We conclude that in the context of 22q11-12 regional alterations present in SMARCB1-deleted tumors, simultaneous EWSR1 involvement may be misinterpreted as equivalent to EWSR1 rearrangement. A detailed clinicopathologic correlation and supplementing the EWSR1 FISH assay with complementary methodology is mandatory for correct diagnosis. © 2016 Wiley Periodicals, Inc.

Indexed as

AdolescentAdultCalmodulin-Binding ProteinsChild, PreschoolChordomaChromosomes, Human, Pair 22FemaleHumansIn Situ Hybridization, FluorescenceMaleMyoepitheliomaRhabdoid TumorRNA-Binding Protein EWSRNA-Binding ProteinsSarcomaSMARCB1 ProteinCalmodulin-Binding ProteinsEWSR1 protein, humanRNA-Binding Protein EWSRNA-Binding ProteinsSMARCB1 ProteinSMARCB1 protein, human

Identifiers

PMID27218413
PMCPMC5006943
OpenAlexW2402044808

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.