Evidence map›Paper›PMID 27217242›Full record

ArticleScientific reports2016

Integrated Microfluidic Isolation of Aptamers Using Electrophoretic Oligonucleotide Manipulation.

Jinho Kim, Timothy R Olsen, Jing Zhu, John P Hilton, Kyung-Ae Yang, Renjun Pei, Milan N Stojanovic, Qiao Lin

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. A Microfluidic Dual-Aptamer Sandwich Assay for Rapid and Cost-Effective Detection of Recombinant Proteins.Microchemical journal : devoted to the application of microtechniques in all branches of science · 2023
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. The Application of Microfluidic Technologies in Aptamer Selection.Frontiers in cell and developmental biology · 2021
    Review
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. INTEGRATED MICROFLUIDIC SELEX USING FREE SOLUTION ELECTROKINETICS.Journal of the Electrochemical Society · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jinho KimDepartment of Mechanical Engineering, Columbia University, New York, New York 10027, United States.
Timothy R OlsenDepartment of Mechanical Engineering, Columbia University, New York, New York 10027, United States.
Jing ZhuDepartment of Mechanical Engineering, Columbia University, New York, New York 10027, United States.
John P HiltonDepartment of Mechanical Engineering, Columbia University, New York, New York 10027, United States.
Kyung-Ae YangDivision of Clinical Pharmacology and Experimental Therapeutics, Department of Medicine, Columbia University, Columbia University, New York, NY 10032, United States.
Renjun PeiDivision of Nanobiomedicine, Key Laboratory of Nano-Bio Interface, Suzhou Institute of Nano-Tech and Nano-Bionics, Chinese Academy of Sciences, Suzhou, Jiangsu 215123, China.
Milan N StojanovicDivision of Clinical Pharmacology and Experimental Therapeutics, Department of Medicine, Columbia University, Columbia University, New York, NY 10032, United States.
Qiao LinDepartment of Mechanical Engineering, Columbia University, New York, New York 10027, United States.

Funding

Clinical and Translational Science AwardUL1TR000040 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GINSBERG, HENRY N · 2012 to 2015
$26.2M
NRSA Training CoreTL1TR001875 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SPANN, MARISA N, TAYLOR, JACQUELYN Y · 2016 to 2025
$8.9M
Theranostic Nano-objects: Basic Principles and Initial ApplicationsR01GM104960 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI STOJANOVIC, MILAN N, YAN, HAO · 2012 to 2016
$5.4M
Clinical and Translational Science AwardTL1TR000082 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GINSBERG, HENRY N · 2012 to 2015
$732k
Automated Microfluidic Selection of Aptamers against CarbohydratesR21CA199849 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI STOJANOVIC, MILAN N · 2015 to 2016
$612k
Microfluidic Selection of Aptamers for Biological Purification ApplicationsR21GM104204 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI LIN, QIAO · 2012 to 2012
$196k
NCATS NIH HHS TL1 TR000082NCATS NIH HHS TL1 TR001875NCATS NIH HHS UL1 TR000040NCI NIH HHS R21 CA199849NIGMS NIH HHS R01 GM104960NIGMS NIH HHS R21 GM104204
6 · The paper itself

Abstract

We present a microfluidic approach to integrated isolation of DNA aptamers via systematic evolution of ligands by exponential enrichment (SELEX). The approach employs a microbead-based protocol for the processes of affinity selection and amplification of target-binding oligonucleotides, and an electrophoretic DNA manipulation scheme for the coupling of these processes, which are required to occur in different buffers. This achieves the full microfluidic integration of SELEX, thereby enabling highly efficient isolation of aptamers in drastically reduced times and with minimized consumption of biological material. The approach as such also offers broad target applicability by allowing selection of aptamers with respect to targets that are either surface-immobilized or solution-borne, potentially allowing aptamers to be developed as readily available affinity reagents for a wide range of targets. We demonstrate the utility of this approach on two different procedures, respectively for isolating aptamers against a surface-immobilized protein (immunoglobulin E) and a solution-phase small molecule (bisboronic acid in the presence of glucose). In both cases aptamer candidates were isolated in three rounds of SELEX within a total process time of approximately 10 hours.

Indexed as

SELEX Aptamer TechniqueAptamers, NucleotideBoronic AcidsElectrophoresisImmunoglobulin EMicrofluidicsAptamers, NucleotideBoronic AcidsImmunoglobulin E

Identifiers

PMID27217242
PMCPMC4877600

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.