Evidence map›Paper›PMID 27216630›Full record

ArticleMolecular systems biology2016

Slowdown of growth controls cellular differentiation.

Jatin Narula, Anna Kuchina, Fang Zhang, Masaya Fujita, Gürol M Süel, Oleg A Igoshin

Abstract read
In one paragraph

Article in Molecular systems biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Unique growth and morphology properties of Clade 5bioRxiv : the preprint server for biology · 2025
    Article
  5. Article
  6. Article
  7. Review
  8. The motility-matrix production switch inJournal of bacteriology · 2024
    Article
  9. Article
  10. Article
  11. Dynamic gene expression and growth underlie cell-to-cell heterogeneity inProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  12. Article
  13. Article
  14. Artificial Sporulation Induction (ASI) byInternational journal of molecular sciences · 2020
    Article
  15. Article
  16. Article
  17. Article
  18. Role of metabolic spatiotemporal dynamics in regulating biofilm colony expansion.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jatin NarulaDepartment of Bioengineering, Rice University, Houston, TX, USA.
Anna KuchinaDivision of Biological Sciences, UCSD, San Diego, CA, USA.
Fang ZhangDivision of Biological Sciences, UCSD, San Diego, CA, USA.
Masaya FujitaDepartment of Biology and Biochemistry, University of Houston, Houston, TX, USA.
Gürol M SüelDivision of Biological Sciences, UCSD, San Diego, CA, USA.
Oleg A IgoshinDepartment of Bioengineering, Rice University, Houston, TX, USA igoshin@rice.edu.ORCID 0000-0002-1449-4772

Funding

SYNTHETIC SYSTEMSP50GM085764 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HASTY, JEFF M, IDEKER, TREY · 2010 to 2018
$23.3M
Regulation of pluripotent differentiation by gene circuit interactions.R01GM088428 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI SUEL, GUROL MEHMET · 2009 to 2013
$1.4M
Howard Hughes Medical InstituteNIGMS NIH HHS P50 GM085764NIGMS NIH HHS R01 GM088428
6 · The paper itself

Abstract

How can changes in growth rate affect the regulatory networks behavior and the outcomes of cellular differentiation? We address this question by focusing on starvation response in sporulating Bacillus subtilis We show that the activity of sporulation master regulator Spo0A increases with decreasing cellular growth rate. Using a mathematical model of the phosphorelay-the network controlling Spo0A-we predict that this increase in Spo0A activity can be explained by the phosphorelay protein accumulation and lengthening of the period between chromosomal replication events caused by growth slowdown. As a result, only cells growing slower than a certain rate reach threshold Spo0A activity necessary for sporulation. This growth threshold model accurately predicts cell fates and explains the distribution of sporulation deferral times. We confirm our predictions experimentally and show that the concentration rather than activity of phosphorelay proteins is affected by the growth slowdown. We conclude that sensing the growth rates enables cells to indirectly detect starvation without the need for evaluating specific stress signals.

Indexed as

Bacillus subtilisBacterial ProteinsChromosomes, BacterialCulture MediaGene Expression Regulation, BacterialModels, TheoreticalSpores, BacterialTranscription FactorsBacterial ProteinsCulture MediaSpo0A protein, Bacillus subtilisTranscription FactorsB. subtilisphosphorelaysignal integration

Identifiers

PMID27216630
PMCPMC5289222

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.