ArticleScientific reports2016
Whole genome analysis of halotolerant and alkalotolerant plant growth-promoting rhizobacterium Klebsiella sp. D5A.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.
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63 citing papers in PubMed, 116 citations in OpenAlex.
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- Genotype-Specific Interactions Between Wheat and Rhizosphere Microbiome Under Drought Stress.Plants (Basel, Switzerland) · 2026Article
- Molecular and functional diversity of plant associated microbes: biotechnological potential, genomics and commercialization for climate resilient agriculture.Biologia futura · 2026Review
- Salt stress mitigating potential of bacterial endophytes isolated from Moringa oleifera.Scientific reports · 2025Article
- Community Structure, Growth-Promoting Potential, and Genomic Analysis of Seed-Endophytic Bacteria inMicroorganisms · 2025Article
- Antibacterial and Biopriming Effects of Nostocales Cyanobacteria on Tomato Plants Infected with Bacterial Spot Disease.Current microbiology · 2025Article
- Comparison of TwoPlants (Basel, Switzerland) · 2025Article
- Halophytes as holobionts: disentangling the contribution of plant genotype and environmental factors to the associated microbiome of hydro- and xerohalophytes.Current research in microbial sciences · 2025Article
- Co-inoculation ofFrontiers in plant science · 2025Article
- Genome Insights into Beneficial Microbial Strains Composing SIMBA Microbial Consortia Applied as Biofertilizers for Maize, Wheat and Tomato.Microorganisms · 2024Article
- Production of Exopolysaccharides and İndole Acetic Acid (IAA) by Rhizobacteria and Their Potential against Drought Stress in Upland Rice.Journal of microbiology and biotechnology · 2024Article
- Evaluating lignin degradation under limited oxygen conditions by bacterial isolates from forest soil.Scientific reports · 2024Article
- Article
- Time-Course Responses of Apple Leaf Endophytes to the Infection ofJournal of fungi (Basel, Switzerland) · 2024Article
- Halotolerant Citrobacter sp. remediates salinity stress and promotes the growth of Vigna radiata (L) by secreting extracellular polymeric substances (EPS) and biofilm formation: a novel active cell for microbial desalination cell (MDC).International microbiology : the official journal of the Spanish Society for Microbiology · 2024Article
- IAA-producing plant growth promoting rhizobacteria fromFrontiers in plant science · 2024Article
- Secretory molecules from secretion systems fine-tune the host-beneficial bacteria (PGPRs) interaction.Frontiers in microbiology · 2024Review
- Alleviating arsenic stress affecting the growth ofFrontiers in microbiology · 2024Article
- Study on the mechanism of salt relief and growth promotion of Enterobacter cloacae on cotton.BMC plant biology · 2023Article
3 more citing papers are in PubMed but not listed here.
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Authors and funding
6 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
This research undertook the systematic analysis of the Klebsiella sp. D5A genome and identification of genes that contribute to plant growth-promoting (PGP) traits, especially genes related to salt tolerance and wide pH adaptability. The genome sequence of isolate D5A was obtained using an Illumina HiSeq 2000 sequencing system with average coverages of 174.7× and 200.1× using the paired-end and mate-pair sequencing, respectively. Predicted and annotated gene sequences were analyzed for similarity with the Kyoto Encyclopedia of Genes and Genomes (KEGG) enzyme database followed by assignment of each gene into the KEGG pathway charts. The results show that the Klebsiella sp. D5A genome has a total of 5,540,009 bp with 57.15% G + C content. PGP conferring genes such as indole-3-acetic acid (IAA) biosynthesis, phosphate solubilization, siderophore production, acetoin and 2,3-butanediol synthesis, and N2 fixation were determined. Moreover, genes putatively responsible for resistance to high salinity including glycine-betaine synthesis, trehalose synthesis and a number of osmoregulation receptors and transport systems were also observed in the D5A genome together with numerous genes that contribute to pH homeostasis. These genes reveal the genetic adaptation of D5A to versatile environmental conditions and the effectiveness of the isolate to serve as a plant growth stimulator.
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