Evidence map›Paper›PMID 27216501›Full record

ArticleJournal of molecular biology2016

The Structure-Specific Recognition Protein 1 Associates with Lens Epithelium-Derived Growth Factor Proteins and Modulates HIV-1 Replication.

Angelica P Lopez, Jeffrey R Kugelman, Jose Garcia-Rivera, Eduardo Urias, Sandra A Salinas, Martin E Fernandez-Zapico, Manuel Llano

Abstract read
In one paragraph

Article in Journal of molecular biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Angelica P LopezDepartment of Biological Sciences, University of Texas at El Paso, El Paso, TX 79968, USA.
Jeffrey R KugelmanDepartment of Biological Sciences, University of Texas at El Paso, El Paso, TX 79968, USA.
Jose Garcia-RiveraDepartment of Biological Sciences, University of Texas at El Paso, El Paso, TX 79968, USA.
Eduardo UriasDepartment of Biological Sciences, University of Texas at El Paso, El Paso, TX 79968, USA.
Sandra A SalinasDepartment of Biological Sciences, University of Texas at El Paso, El Paso, TX 79968, USA.
Martin E Fernandez-ZapicoSchulze Center for Novel Therapeutics, Mayo Clinic, Rochester, MN 55905, USA. Electronic address: fernandezzapico.martin@mayo.edu.
Manuel LlanoDepartment of Biological Sciences, University of Texas at El Paso, El Paso, TX 79968, USA. Electronic address: mllano@utep.edu.
The University of Texas at El Paso · USMayo Clinic · US

Funding

Tissue CoreP50CA102701 · NCI · MAYO CLINIC ROCHESTER · PI MUKHOPADHYAY, DEBABRATA · 2004 to 2018
$32.7M
PILOT AND FEASIBILTY PROGRAMP30DK084567 · NIDDK · MAYO CLINIC ROCHESTER · PI Nicholas F. LaRusso · 2009 to 2026
$22.2M
TOXICOLOGY PROJECTG12RR008124 · NCRR · UNIVERSITY OF TEXAS EL PASO · PI AGUILERA, RENATO J · 1992 to 2011
$20.8M
RISE Scholars Program at UTEPR25GM069621 · NIGMS · UNIVERSITY OF TEXAS EL PASO · PI AGUILERA, RENATO J · 2004 to 2021
$11.2M
Mechanism of Pancreatic CarcinogenesisR01CA136526 · NCI · MAYO CLINIC ROCHESTER · PI FERNANDEZ-ZAPICO, MARTIN ERNESTO · 2009 to 2019
$3.0M
Regulation of the HIV cofactor activity of LEDGF/p75 by interacting proteinsSC1AI098238 · NIAID · UNIVERSITY OF TEXAS EL PASO · PI LLANO, MANUEL · 2011 to 2014
$1.4M
NCI NIH HHS P50 CA102701NCI NIH HHS R01 CA136526NCRR NIH HHS G12 RR008124NIAID NIH HHS SC1 AI098238NIDDK NIH HHS P30 DK084567NIGMS NIH HHS R25 GM069621
6 · The paper itself

Abstract

The lens epithelium-derived growth factor p75 (LEDGF/p75) is a chromatin-bound protein essential for efficient lentiviral integration. Genome-wide studies have located LEDGF/p75 inside actively transcribed genes where it mediates lentiviral integration. Although its role in HIV-1 integration is clearly established, the role of LEDGF/p75-associated proteins in HIV-1 infection remains unexplored. Using protein-protein interaction assays, we demonstrated that LEDGF/p75 complexes with a chromatin-remodeling complex facilitates chromatin transcription (FACT), a heterodimer of the structure-specific recognition protein 1 (SSRP1) and the human homolog of suppressor of Ty 16 (hSpt16). Detailed analysis of the interaction of LEDGF/p75 with the FACT complex indicates that LEDGF/p75 interacts with SSRP1 in an hSpt16-independent manner that requires the PWWP domain of LEDGF proteins and the HMG domain of SSRP1. Functional characterizations demonstrate a LEDGF/p75-independent role of SSRP1 in the regulation of HIV-1 replication. shRNA-mediated partial knockdown of SSRP1 reduces HIV-1 infection, but not Murine Leukemia Virus, in human CD4(+) T cells. Similarly, SSRP1 knockdown affects infection by HIV-1-derived viruses that express genes from the viral LTR but not from an internal immediate-early CMV promoter, suggesting a role of SSRP1 in LTR-driven gene expression but not in viral DNA integration. Together, our data demonstrate for the first time the association of LEDGF proteins with the FACT complex and give further support to a role of SSRP1 in HIV-1 infection.

Indexed as

Adaptor Proteins, Signal TransducingCell LineChromatinDNA-Binding ProteinsDNA ReplicationHEK293 CellsHigh Mobility Group ProteinsHIV-1HIV IntegraseHumansIntercellular Signaling Peptides and ProteinsTranscriptional Elongation FactorsTranscription FactorsVirus IntegrationVirus ReplicationAdaptor Proteins, Signal TransducingChromatinDNA-Binding ProteinsHigh Mobility Group ProteinsHIV IntegraseIntercellular Signaling Peptides and Proteinslens epithelium-derived growth factorPSIP1 protein, humanSSRP1 protein, humanTranscriptional Elongation FactorsTranscription FactorsFACT complexHIV-1 cofactorHIV-1 replicationHMG domainPWWP domain

Identifiers

PMID27216501
PMCPMC4938748
OpenAlexW2396305177

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.