ArticleRice (New York, N.Y.)2016
Comparative Leaf and Root Transcriptomic Analysis of two Rice Japonica Cultivars Reveals Major Differences in the Root Early Response to Osmotic Stress.
Article in Rice (New York, N.Y.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 2 of them syntheses that pooled it.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
29 citing papers in PubMed, 2 syntheses or guidelines pooled it, 41 citations in OpenAlex.
- A Comparative Transcriptomic Meta-Analysis Revealed Conserved Key Genes and Regulatory Networks Involved in Drought Tolerance in Cereal Crops.International journal of molecular sciences · 2021Pooled it
- A Meta-Analysis of Comparative Transcriptomic Data Reveals a Set of Key Genes Involved in the Tolerance to Abiotic Stresses in Rice.International journal of molecular sciences · 2019Pooled it
- Comparative Transcriptome Analysis of Leaves and Roots Responses in Salt-Tolerant Barley Line CC89/Giza123 Under Salinity Stress.Current issues in molecular biology · 2026Article
- Transcriptomic Analyses and Weighted Gene Co-Expression Network Analysis (WGCNA) Identify Key Drought-Responsive Genes in Rice Roots (Plants (Basel, Switzerland) · 2026Article
- Integration of Genetic and Imaging Data to Detect QTL for Root Traits in Interspecific Soybean Populations.International journal of molecular sciences · 2025Article
- A multi-level approach reveals key physiological and molecular traits in the response of two rice genotypes subjected to water deficit at the reproductive stage.Plant-environment interactions (Hoboken, N.J.) · 2023Review
- Characterization of Malectin/Malectin-like Receptor-like Kinase Family Members in Foxtail Millet (Life (Basel, Switzerland) · 2023Article
- Application of RNA sequencing to understand the response of rice seedlings to salt-alkali stress.BMC genomics · 2023Article
- Physiological responses and transcriptome analysis of soybean under gradual water deficit.Frontiers in plant science · 2023Article
- Transcriptomic analysis reveals the gene regulatory networks involved in leaf and root response to osmotic stress in tomato.Frontiers in plant science · 2023Article
- Molecular mechanism of mulberry response to drought stress revealed by complementary transcriptomic and iTRAQ analyses.BMC plant biology · 2022Article
- Transcriptome analysis reveals key drought-stress-responsive genes in soybean.Frontiers in genetics · 2022Article
- Phenotypic and transcriptomic responses of cultivated sunflower seedlings (Helianthus annuus L.) to four abiotic stresses.PloS one · 2022Article
- Temporal Dynamics of Endogenous Bacterial Composition in Rice Seeds During Maturation and Storage, and Spatial Dynamics of the Bacteria During Seedling Growth.Frontiers in microbiology · 2022Article
- Transcriptomic Analysis of Salt-Stress-Responsive Genes in Barley Roots and Leaves.International journal of molecular sciences · 2021Article
- Dynamics of cell wall structure and related genomic resources for drought tolerance in rice.Plant cell reports · 2021Review
- Extensive Variation in Drought-Induced Gene Expression Changes Between Loblolly Pine Genotypes.Frontiers in genetics · 2021Article
- Spatiotemporal Assembly of Bacterial and Fungal Communities of Seed-Seedling-Adult in Rice.Frontiers in microbiology · 2021Article
- A Comparison of Differential Gene Expression in Response to the Onset of Water Stress Between Three Hybrid Brachiaria Genotypes.Frontiers in plant science · 2021Article
- Comparative Transcriptomics and Co-Expression Networks Reveal Tissue- and Genotype-Specific Responses ofGenes · 2020Article
Corrections and comments
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Authors and funding
5 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundRice (Oryza sativa L.) is one of the most important crops cultivated in both tropical and temperate regions and is characterized by a low water-use efficiency and a high sensitivity to a water deficit, with yield reductions occurring at lower stress levels compared to most other crops. To identify genes and pathways involved in the tolerant response to dehydration, a powerful approach consists in the genome-wide analysis of stress-induced expression changes by comparing drought-tolerant and drought-sensitive genotypes.
resultsThe physiological response to osmotic stress of 17 japonica rice genotypes was evaluated. A clear differentiation of the most tolerant and the most sensitive phenotypes was evident, especially after 24 and 48 h of treatment. Two genotypes, which were characterized by a contrasting response (tolerance/sensitivity) to the imposed stress, were selected. A parallel transcriptomic analysis was performed on roots and leaves of these two genotypes at 3 and 24 h of stress treatment. RNA-Sequencing data showed that the tolerant genotype Eurosis and the sensitive genotype Loto mainly differed in the early response to osmotic stress in roots. In particular, the tolerant genotype was characterized by a prompt regulation of genes related to chromatin, cytoskeleton and transmembrane transporters. Moreover, a differential expression of transcription factor-encoding genes, genes involved in hormone-mediate signalling and genes involved in the biosynthesis of lignin was observed between the two genotypes.
conclusionsOur results provide a transcriptomic characterization of the osmotic stress response in rice and identify several genes that may be important players in the tolerant response.
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