Evidence map›Paper›PMID 27215641›Full record

ArticleMammalian genome : official journal of the International Mammalian Genome Society2016

Exome sequencing reveals a nebulin nonsense mutation in a dog model of nemaline myopathy.

Jacquelyn M Evans, Melissa L Cox, Jonathan Huska, Frank Li, Luis Gaitero, Ling T Guo, Margaret L Casal, Henk L Granzier, G Diane Shelton, Leigh Anne Clark

Abstract read
In one paragraph

Article in Mammalian genome : official journal of the International Mammalian Genome Society, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Sarcomeric myopathies associated with tremor: new insights and perspectives.Journal of muscle research and cell motility · 2020
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 3 countries.

Jacquelyn M EvansDepartment of Genetics and Biochemistry, Clemson University, Clemson, SC, 29634, USA.
Melissa L CoxCAG GmbH - Center for Animal Genetics, Tübingen, Germany.
Jonathan HuskaOntario Veterinary College, University of Guelph, Guelph, ON, Canada.
Frank LiDepartment of Cellular and Molecular Medicine, University of Arizona, Tucson, AZ, 85724, USA.
Luis GaiteroOntario Veterinary College, University of Guelph, Guelph, ON, Canada.
Ling T GuoDepartment of Pathology, University of California San Diego, La Jolla, CA, 92093, USA.
Margaret L CasalSchool of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Henk L GranzierDepartment of Cellular and Molecular Medicine, University of Arizona, Tucson, AZ, 85724, USA.
G Diane SheltonDepartment of Pathology, University of California San Diego, La Jolla, CA, 92093, USA. gshelton@ucsd.edu.
Leigh Anne ClarkDepartment of Genetics and Biochemistry, Clemson University, Clemson, SC, 29634, USA. lclark4@clemson.edu.
Clemson University · USUniversity of Arizona · USUniversity of California, San Diego · USUniversity of Guelph · CABernstein Center for Computational Neuroscience Tübingen · DEUniversity of Pennsylvania · US

Funding

VITAMIN AP30CA023074 · NCI · UNIVERSITY OF ARIZONA · PI Dan Theodorescu · 1985 to 2026
$110.2M
Referral Ctr-Animal models of human genetic diseaseP40OD010939 · OD · UNIVERSITY OF PENNSYLVANIA · PI CASAL, MARGRET L · 2012 to 2023
$7.9M
Roles of Nebulin in Structure and Function of Striated MuscleR01AR053897 · NIAMS · UNIVERSITY OF ARIZONA · PI Henk L. GRANZIER · 2007 to 2026
$7.4M
Naturally Occurring Dog Model for Juvenile DermatomyositisR15AR062868 · NIAMS · CLEMSON UNIVERSITY · PI CLARK, LEIGH ANNE · 2013 to 2013
$306k
NCI NIH HHS P30 CA023074NIAMS NIH HHS R01 AR053897NIAMS NIH HHS R15 AR062868NIH HHS P40 OD010939
6 · The paper itself

Abstract

Nemaline myopathy (NM) is a congenital muscle disorder associated with muscle weakness, hypotonia, and rod bodies in the skeletal muscle fibers. Mutations in 10 genes have been implicated in human NM, but spontaneous cases in dogs have not been genetically characterized. We identified a novel recessive myopathy in a family of line-bred American bulldogs (ABDs); rod bodies in muscle biopsies established this as NM. Using SNP profiles from the nuclear family, we evaluated inheritance patterns at candidate loci and prioritized TNNT1 and NEB for further investigation. Whole exome sequencing of the dam, two affected littermates, and an unaffected littermate revealed a nonsense mutation in NEB (g.52734272 C>A, S8042X). Whole tissue gel electrophoresis and western blots confirmed a lack of full-length NEB in affected tissues, suggesting nonsense-mediated decay. The pathogenic variant was absent from 120 dogs of 24 other breeds and 100 unrelated ABDs, suggesting that it occurred recently and may be private to the family. This study presents the first molecularly characterized large animal model of NM, which could provide new opportunities for therapeutic approaches.

Indexed as

Codon, NonsenseAnimalsBase SequenceDNA Mutational AnalysisDog DiseasesDogsExome SequencingFemaleGenetic Association StudiesMaleMuscle ProteinsMuscle, SkeletalMyopathies, NemalineCodon, NonsenseMuscle Proteinsnebulin

Identifiers

PMID27215641
PMCPMC5100356
OpenAlexW2395756049

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.