Evidence map›Paper›PMID 27214759›Full record

ArticleBiotechnology journal2016

Quantitative definition and monitoring of the host cell protein proteome using iTRAQ - a study of an industrial mAb producing CHO-S cell line.

Lesley M Chiverton, Caroline Evans, Jagroop Pandhal, Andrew R Landels, Byron J Rees, Peter R Levison, Phillip C Wright, C Mark Smales

Open access · hybridAbstract read
In one paragraph

Article in Biotechnology journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Lesley M ChivertonCentre for Molecular Processing and School of Biosciences, University of Kent, Canterbury, Kent, UK.
Caroline EvansChELSI Institute, Department of Chemical and Biological Engineering, University of Sheffield, Sheffield, UK.
Jagroop PandhalChELSI Institute, Department of Chemical and Biological Engineering, University of Sheffield, Sheffield, UK.
Andrew R LandelsChELSI Institute, Department of Chemical and Biological Engineering, University of Sheffield, Sheffield, UK.
Byron J ReesPall Life Sciences, Portsmouth, UK.
Peter R LevisonPall Life Sciences, Portsmouth, UK.
Phillip C WrightChELSI Institute, Department of Chemical and Biological Engineering, University of Sheffield, Sheffield, UK. p.c.wright@sheffield.ac.uk.
C Mark SmalesCentre for Molecular Processing and School of Biosciences, University of Kent, Canterbury, Kent, UK. c.m.smales@kent.ac.uk.
University of Sheffield · GBPall Corporation (United Kingdom) · GBUniversity of Kent · GB

Funding

Biotechnology and Biological Sciences Research Council BB/G010307/1
6 · The paper itself

Abstract

There are few studies defining CHO host cell proteins (HCPs) and the flux of these throughout a downstream purification process. Here we have applied quantitative iTRAQ proteomics to follow the HCP profile of an antibody (mAb) producing CHO-S cell line throughout a standard downstream purification procedure consisting of a Protein A, cation and anion exchange process. We used both 6 sample iTRAQ experiment to analyze technical replicates of three samples, which were culture harvest (HCCF), Protein A flow through and Protein A eluate and an 8 sample format to analyze technical replicates of four sample types; HCCF compared to Protein A eluate and subsequent cation and anion exchange purification. In the 6 sample iTRAQ experiment, 8781 spectra were confidently matched to peptides from 819 proteins (including the mAb chains). Across both the 6 and 8 sample experiments 936 proteins were identified. In the 8 sample comparison, 4187 spectra were confidently matched to peptides from 219 proteins. We then used the iTRAQ data to enable estimation of the relative change of individual proteins across the purification steps. These data provide the basis for application of iTRAQ for process development based upon knowledge of critical HCPs.

Indexed as

AnimalsAntibodies, MonoclonalCHO CellsChromatography, Ion ExchangeCricetinaeCricetulusIndustrial MicrobiologyProteomicsStaphylococcal Protein AAntibodies, MonoclonalStaphylococcal Protein ABioprocessingChinese hamster ovary (CHO)Host cell proteinsiTRAQMonoclonal antibody

Identifiers

PMID27214759
PMCPMC5031201
OpenAlexW2402354068

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.