Evidence map›Paper›PMID 27214075›Full record

ArticleBone marrow transplantation2016

Identification of high-risk amino-acid substitutions in hematopoietic cell transplantation: a challenging task.

S R Marino, S M Lee, T A Binkowski, T Wang, M Haagenson, H-L Wang, M Maiers, S Spellman, K van Besien, S J Lee and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Bone marrow transplantation, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 3 pooled it
0.5field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 3 syntheses or guidelines pooled it, 11 citations in OpenAlex.

  1. Guideline
  2. Pooled it
  3. Guideline
  4. Article
  5. Review
  6. Article
  7. Review
  8. Artificial Intelligence Approaches in Hematopoietic Cell Transplantation: A Review of the Current Status and Future DirectionsTurkish journal of haematology : official journal of Turkish Society of Haematology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 1 country.

S R MarinoDepartment of Pathology, University of Chicago Medical Center, Chicago, IL, USA.
S M LeeDepartment of Public Health Sciences, University of Chicago, Chicago, IL, USA.
T A BinkowskiCenter for Structural Genomics of Infectious Diseases and Midwest Center for Structural Genomics, Argonne National Laboratory, Argonne, IL, USA.
T WangDivision of Biostatistics, Medical College of Wisconsin, Milwaukee, WI, USA.
M HaagensonCenter for International Blood and Marrow Transplant Research, Minneapolis, MN, USA.
H-L WangDivision of Biostatistics, Medical College of Wisconsin, Milwaukee, WI, USA.
M MaiersNational Marrow Donor Program, Minneapolis, MN, USA.ORCID http://orcid.org/0000-0002-0198-2064
S SpellmanNational Marrow Donor Program, Minneapolis, MN, USA.
K van BesienDivision of Hematology, Weill-Cornell Medical College, New York, NY, USA.ORCID http://orcid.org/0000-0002-8164-6211
S J LeeCenter for International Blood and Marrow Transplant Research, Milwaukee, WI, USA.
T KarrisonDepartment of Public Health Sciences, University of Chicago, Chicago, IL, USA.
A ArtzDepartment of Medicine, University of Chicago Medical Center, Chicago, IL, USA.
Chicago Department of Public Health · USNational Marrow Donor Program · USMedical College of Wisconsin · USUniversity of Chicago Medical Center · USArgonne National Laboratory · USCornell University · US

Funding

Data Resource for Analyzing Blood &Marrow TransplantsU24CA076518 · NCI · MEDICAL COLLEGE OF WISCONSIN · PI Amy M Moskop, Bronwen Shaw · 1998 to 2026
$105.2M
Easy-to-read Informed Consent for HCT Clinical TrialsU10HL069294 · NHLBI · MEDICAL COLLEGE OF WISCONSIN · PI HOROWITZ, MARY MARESCA · 2011 to 2016
$43.8M
NCI NIH HHS U24 CA076518NHLBI NIH HHS U10 HL069294
6 · The paper itself

Abstract

Allogeneic hematopoietic cell transplantation (HCT) offers the potential to cure hematologic malignancies. In the absence of an HLA-matched donor, HLA mismatched unrelated donors may be used, although risks of GvHD and treatment-related mortality (TRM) are higher. Identification and avoidance of amino-acid substitution and position types (AASPT) conferring higher risks of TRM and GvHD would potentially improve the success of transplantation from single HLA mismatched unrelated donors. Using random forest and logistic regression analyses, we identified 19 AASPT associated with greater risks for at least one adverse transplant outcome: grade III-IV acute GvHD, TRM, lower disease-free survival or worse overall survival relative to HLA-matched unrelated donors and to other AASPT. When tested in an independent validation cohort of 3530 patients, none of the AASPT from the training set were validated as high risk, however. Review of the literature shows that failure to validate original observations is the rule and not the exception in immunobiology and emphasizes the importance of independent validation before clinical application. Our current data do not support avoiding any specific class I AASPT for unrelated donors. Additional studies should be performed to fully understand the role of AASPT in HCT outcomes.

Indexed as

Amino Acid SubstitutionUnrelated DonorsAdolescentAdultAgedChildChild, PreschoolHematopoietic Stem Cell TransplantationHistocompatibilityHumansInfantLogistic ModelsMiddle AgedRisk AssessmentTreatment OutcomeUnsupervised Machine Learning

Identifiers

PMID27214075
PMCPMC5052106
OpenAlexW2400788995

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.