Evidence map›Paper›PMID 27213624›Full record

ArticlePloS one2016

Characterization and Functional Analysis of 4-Coumarate:CoA Ligase Genes in Mul-berry.

Chuan-Hong Wang, Jian Yu, Yu-Xiang Cai, Pan-Pan Zhu, Chang-Ying Liu, Ai-Chun Zhao, Rui-Hua Lü, Meng-Jiao Li, Feng-Xiang Xu, Mao-De Yu

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 70 citations in OpenAlex.

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  18. Host-Induced Gene Silencing of a G Protein α Subunit GeneJournal of fungi (Basel, Switzerland) · 2021
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Chuan-Hong WangState Key Laboratory of Silkworm Genome Biology/College of Biotechnology, Southwest University, Chongqing, 400716, China.ORCID 0000-0001-8446-9268
Jian YuState Key Laboratory of Silkworm Genome Biology/College of Biotechnology, Southwest University, Chongqing, 400716, China.
Yu-Xiang CaiState Key Laboratory of Silkworm Genome Biology/College of Biotechnology, Southwest University, Chongqing, 400716, China.
Pan-Pan ZhuState Key Laboratory of Silkworm Genome Biology/College of Biotechnology, Southwest University, Chongqing, 400716, China.
Chang-Ying LiuState Key Laboratory of Silkworm Genome Biology/College of Biotechnology, Southwest University, Chongqing, 400716, China.
Ai-Chun ZhaoState Key Laboratory of Silkworm Genome Biology/College of Biotechnology, Southwest University, Chongqing, 400716, China.
Rui-Hua LüState Key Laboratory of Silkworm Genome Biology/College of Biotechnology, Southwest University, Chongqing, 400716, China.
Meng-Jiao LiState Key Laboratory of Silkworm Genome Biology/College of Biotechnology, Southwest University, Chongqing, 400716, China.
Feng-Xiang XuState Key Laboratory of Silkworm Genome Biology/College of Biotechnology, Southwest University, Chongqing, 400716, China.
Mao-De YuState Key Laboratory of Silkworm Genome Biology/College of Biotechnology, Southwest University, Chongqing, 400716, China.
Southwest University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A small, multigene family encodes 4-coumarate:CoA ligases (4CLs) that catalyze the ligation of CoA to hydroxycinnamic acids, a branch point directing metabolites to flavonoid or monolignol pathways. In this study, we characterized four 4CL genes from M. notabilis Genome Database, and cloned four Ma4CL genes from M. atropurpurea cv. Jialing No.40. A tissue-specific expression analysis indicated that Ma4CL3 was expressed at higher levels than the other genes, and that Ma4CL3 was strongly expressed in root bark, stem bark, and old leaves. Additionally, the expression pattern of Ma4CL3 was similar to the trend of the total flavonoid content throughout fruit development. A phylogenetic analysis suggested that Mn4CL1, Mn4CL2, and Mn4CL4 belong to class I 4CLs, and Mn4CL3 belongs to class II 4CLs. Ma4CL genes responded differently to a series of stresses. Ma4CL3 expression was higher than that of the other Ma4CL genes following wounding, salicylic acid, and ultraviolet treatments. An in vitro enzyme assay indicated that 4-coumarate acid was the best substrate among cinnamic acid, 4-coumarate acid, and caffeate acid, but no catalytic activity to sinapate acid and ferulate acid. The results of subcellular localization experiments showed that Ma4CL3 localized to the cytomembrane, where it activated transcription. We used different vectors and strategies to fuse Ma4CL3 with stilbene synthase (STS) to construct four Ma4CL-MaSTS co-expression systems to generate resveratrol. The results indicated that only a transcriptional fusion vector, pET-Ma4CL3-T-MaSTS, which utilized a T7 promoter and lac operator for the expression of MaSTS, could synthesize resveratrol.

Indexed as

Cloning, MolecularCoenzyme A LigasesCoumaric AcidsGene Expression Regulation, PlantMorusMultigene FamilyPhylogenyPlant BarkPlant LeavesPlant ProteinsPlant StemsPropionatesSubstrate Specificity4-coumarate-CoA ligaseCoenzyme A LigasesCoumaric Acidsp-coumaric acidPlant ProteinsPropionates

Identifiers

PMID27213624
PMCPMC4877003
OpenAlexW2403120719

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.