Evidence map›Paper›PMID 27213181›Full record

ArticleACS infectious diseases2016

De Novo Sequencing and Resurrection of a Human Astrovirus-Neutralizing Antibody.

Walter A Bogdanoff, David Morgenstern, Marshall Bern, Beatrix M Ueberheide, Alicia Sanchez-Fauquier, Rebecca M DuBois

Open access · greenAbstract read
In one paragraph

Article in ACS infectious diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Review
  3. Software Options for the Analysis of MS-Proteomic Data.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  4. Article
  5. Article
  6. Article
  7. Automated Antibody De Novo Sequencing and Its Utility in Biopharmaceutical Discovery.Journal of the American Society for Mass Spectrometry · 2017
    Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Walter A BogdanoffDepartment of Biomolecular Engineering, University of California Santa Cruz , 1156 High Street, Santa Cruz, California 95064, United States.
David MorgensternDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine , New York, New York 10016, United States.
Marshall BernProtein Metrics , San Carlos, California 94070, United States.
Beatrix M UeberheideDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine , New York, New York 10016, United States.
Alicia Sanchez-FauquierViral Gastroenteritis Unit, Centro Nacional de Microbiología, Instituto de Salud Carlos III , Madrid, Spain.
Rebecca M DuBoisDepartment of Biomolecular Engineering, University of California Santa Cruz , 1156 High Street, Santa Cruz, California 95064, United States.
New York University · USUniversity of California, Santa Cruz · USCentro Nacional de Microbiologia · ESProtein Metrics (United States) · US

Funding

UNIVERSITY OF CALIFORNIA, SANTA CRUZ IMSD PROGRAMR25GM058903 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI JURICA, MELISSA S · 1999 to 2019
$12.2M
Training Program/Molecular/Cell/Developmental BiologyT32GM008646 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI STROME, SUSAN · 1999 to 2018
$3.7M
Protein Sequencing Tools for Biological TherapeuticsR42GM103362 · NIGMS · PROTEIN METRICS, LLC · PI FENYO, DAVID · 2015 to 2016
$989k
Acquisition of an Orbitrap Elite Mass Spectrometer with ETDS10OD010582 · OD · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI UEBERHEIDE, BEATRIX MAGDALENA · 2013 to 2013
$600k
Crystal structures and mechanism of disease of the astrovirus capsid proteinK22AI095369 · NIAID · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI DUBOIS, REBECCA MICHELLE · 2013 to 2014
$264k
NIAID NIH HHS K22 AI095369NIGMS NIH HHS R25 GM058903NIGMS NIH HHS R42 GM103362NIGMS NIH HHS T32 GM008646NIH HHS S10 OD010582
6 · The paper itself

Abstract

Monoclonal antibody (mAb) therapeutics targeting cancer, autoimmune diseases, inflammatory diseases, and infectious diseases are growing exponentially. Although numerous panels of mAbs targeting infectious disease agents have been developed, their progression into clinically useful mAbs is often hindered by the lack of sequence information and/or loss of hybridoma cells that produce them. Here we combine the power of crystallography and mass spectrometry to determine the amino acid sequence and glycosylation modification of the Fab fragment of a potent human astrovirus-neutralizing mAb. We used this information to engineer a recombinant antibody single-chain variable fragment that has the same specificity as the parent monoclonal antibody to bind to the astrovirus capsid protein. This antibody can now potentially be developed as a therapeutic and diagnostic agent.

Indexed as

antibodyastrovirusmass spectrometryprotein engineeringprotein sequencingX-ray crystallography

Identifiers

PMID27213181
PMCPMC4869151
OpenAlexW2297176157

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.