ArticlePlant physiology2016
Nonsyntenic Genes Drive Tissue-Specific Dynamics of Differential, Nonadditive, and Allelic Expression Patterns in Maize Hybrids.
Article in Plant physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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23 citing papers in PubMed, 48 citations in OpenAlex.
- The incomplete dominance of gene expression controlled by Trans-eQTL hotspots contributes to heterosis in maize.Nature communications · 2026Article
- Nonadditive gene expression contributing to heterosis in partially heterozygous maize hybrids is predominantly regulated from heterozygous regions.The New phytologist · 2025Article
- Dynamic relationships among pathways producing hydrocarbons and fatty acids of maize silk cuticular waxes.Plant physiology · 2024Article
- Molecular dissection of heterosis in cereal roots and their rhizosphere.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Review
- Multivariate Interaction Analysis ofPlants (Basel, Switzerland) · 2023Article
- Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize.Genome biology · 2023Article
- Epigenetic Changes Occurring in Plant Inbreeding.International journal of molecular sciences · 2023Review
- Gene expression variation explains maize seed germination heterosis.BMC plant biology · 2022Article
- Nonadditive gene expression is correlated with nonadditive phenotypic expression in interspecific triploid hybrids of willow (Salix spp.).G3 (Bethesda, Md.) · 2022Article
- Transcriptome-wide analysis of epitranscriptome and translational efficiency associated with heterosis in maize.Journal of experimental botany · 2021Article
- Global transcriptional profiling between inbred parents and hybrids provides comprehensive insights into ear-length heterosis of maize (Zea mays).BMC plant biology · 2021Article
- Trajectories of Homoeolog-Specific Expression in AllotetraploidFrontiers in plant science · 2021Article
- Transcriptome Reveals Allele Contribution to Heterosis in Maize.Frontiers in plant science · 2021Article
- Temporal Regulation of the Metabolome and Proteome in Photosynthetic and Photorespiratory Pathways Contributes to Maize Heterosis.The Plant cell · 2020Article
- Non-homology-based prediction of gene functions in maize (Zea mays ssp. mays).The plant genome · 2020Article
- Dynamic patterns of circular and linear RNAs in maize hybrid and parental lines.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Single-Parent Expression of Anti-sense RNA Contributes to Transcriptome Complementation in Maize Hybrid.Frontiers in plant science · 2020Article
- Expression profiles of cell-wall related genes vary broadly between two common maize inbreds during stem development.BMC genomics · 2019Article
- Transcriptomic analysis of transgressive segregants revealed the central role of photosynthetic capacity and efficiency in biomass accumulation in sugarcane.Scientific reports · 2018Article
- Inferring synteny between genome assemblies: a systematic evaluation.BMC bioinformatics · 2018Article
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Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Distantly related maize (Zea mays) inbred lines display an exceptional degree of genomic diversity. F1 progeny of such inbred lines are often more vigorous than their parents, a phenomenon known as heterosis. In this study, we investigated how the genetic divergence of the maize inbred lines B73 and Mo17 and their F1 hybrid progeny is reflected in differential, nonadditive, and allelic expression patterns in primary root tissues. In pairwise comparisons of the four genotypes, the number of differentially expressed genes between the two parental inbred lines significantly exceeded those of parent versus hybrid comparisons in all four tissues under analysis. No differentially expressed genes were detected between reciprocal hybrids, which share the same nuclear genome. Moreover, hundreds of nonadditive and allelic expression ratios that were different from the expression ratios of the parents were observed in the reciprocal hybrids. The overlap of both nonadditive and allelic expression patterns in the reciprocal hybrids significantly exceeded the expected values. For all studied types of expression - differential, nonadditive, and allelic - substantial tissue-specific plasticity was observed. Significantly, nonsyntenic genes that evolved after the last whole genome duplication of a maize progenitor from genes with synteny to sorghum (Sorghum bicolor) were highly overrepresented among differential, nonadditive, and allelic expression patterns compared with the fraction of these genes among all expressed genes. This observation underscores the role of nonsyntenic genes in shaping the transcriptomic landscape of maize hybrids during the early developmental manifestation of heterosis in root tissues of maize hybrids.
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