Evidence map›Paper›PMID 27208295›Full record

ArticlePlant physiology2016

The Glycerol-3-Phosphate Acyltransferase GPAT6 from Tomato Plays a Central Role in Fruit Cutin Biosynthesis.

Johann Petit, Cécile Bres, Jean-Philippe Mauxion, Fabienne Wong Jun Tai, Laetitia B B Martin, Eric A Fich, Jérôme Joubès, Jocelyn K C Rose, Frédéric Domergue, Christophe Rothan

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
21.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 123 citations in OpenAlex.

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  5. Advances in mutant characterization for detecting causal mutations in crop plants.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
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10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Johann PetitUnité Mixte de Recherche 1332 BFP, Institut National de la Recherche Agronomique, Université de Bordeaux, F-33140 Villenave d'Ornon, France (J.P., C.B., J.-P.M., F.W.J.T., C.R.);Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, New York 14853 (L.B.B.M., E.A.F., J.K.C.R.);Laboratoire de Biogénèse Membranaire, Université de Bordeaux, Unité Mixte de Recherche 5200, F-33000 Bordeaux, France (J.J., F.D.); andLaboratoire de Biogénèse Membranaire, Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5200, F-33000 Bordeaux, France (J.J., F.D.).
Cécile BresUnité Mixte de Recherche 1332 BFP, Institut National de la Recherche Agronomique, Université de Bordeaux, F-33140 Villenave d'Ornon, France (J.P., C.B., J.-P.M., F.W.J.T., C.R.);Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, New York 14853 (L.B.B.M., E.A.F., J.K.C.R.);Laboratoire de Biogénèse Membranaire, Université de Bordeaux, Unité Mixte de Recherche 5200, F-33000 Bordeaux, France (J.J., F.D.); andLaboratoire de Biogénèse Membranaire, Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5200, F-33000 Bordeaux, France (J.J., F.D.).ORCID 0000-0001-6460-4637
Jean-Philippe MauxionUnité Mixte de Recherche 1332 BFP, Institut National de la Recherche Agronomique, Université de Bordeaux, F-33140 Villenave d'Ornon, France (J.P., C.B., J.-P.M., F.W.J.T., C.R.);Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, New York 14853 (L.B.B.M., E.A.F., J.K.C.R.);Laboratoire de Biogénèse Membranaire, Université de Bordeaux, Unité Mixte de Recherche 5200, F-33000 Bordeaux, France (J.J., F.D.); andLaboratoire de Biogénèse Membranaire, Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5200, F-33000 Bordeaux, France (J.J., F.D.).
Fabienne Wong Jun TaiUnité Mixte de Recherche 1332 BFP, Institut National de la Recherche Agronomique, Université de Bordeaux, F-33140 Villenave d'Ornon, France (J.P., C.B., J.-P.M., F.W.J.T., C.R.);Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, New York 14853 (L.B.B.M., E.A.F., J.K.C.R.);Laboratoire de Biogénèse Membranaire, Université de Bordeaux, Unité Mixte de Recherche 5200, F-33000 Bordeaux, France (J.J., F.D.); andLaboratoire de Biogénèse Membranaire, Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5200, F-33000 Bordeaux, France (J.J., F.D.).
Laetitia B B MartinUnité Mixte de Recherche 1332 BFP, Institut National de la Recherche Agronomique, Université de Bordeaux, F-33140 Villenave d'Ornon, France (J.P., C.B., J.-P.M., F.W.J.T., C.R.);Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, New York 14853 (L.B.B.M., E.A.F., J.K.C.R.);Laboratoire de Biogénèse Membranaire, Université de Bordeaux, Unité Mixte de Recherche 5200, F-33000 Bordeaux, France (J.J., F.D.); andLaboratoire de Biogénèse Membranaire, Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5200, F-33000 Bordeaux, France (J.J., F.D.).ORCID 0000-0002-6921-7246
Eric A FichUnité Mixte de Recherche 1332 BFP, Institut National de la Recherche Agronomique, Université de Bordeaux, F-33140 Villenave d'Ornon, France (J.P., C.B., J.-P.M., F.W.J.T., C.R.);Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, New York 14853 (L.B.B.M., E.A.F., J.K.C.R.);Laboratoire de Biogénèse Membranaire, Université de Bordeaux, Unité Mixte de Recherche 5200, F-33000 Bordeaux, France (J.J., F.D.); andLaboratoire de Biogénèse Membranaire, Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5200, F-33000 Bordeaux, France (J.J., F.D.).
Jérôme JoubèsUnité Mixte de Recherche 1332 BFP, Institut National de la Recherche Agronomique, Université de Bordeaux, F-33140 Villenave d'Ornon, France (J.P., C.B., J.-P.M., F.W.J.T., C.R.);Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, New York 14853 (L.B.B.M., E.A.F., J.K.C.R.);Laboratoire de Biogénèse Membranaire, Université de Bordeaux, Unité Mixte de Recherche 5200, F-33000 Bordeaux, France (J.J., F.D.); andLaboratoire de Biogénèse Membranaire, Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5200, F-33000 Bordeaux, France (J.J., F.D.).
Jocelyn K C RoseUnité Mixte de Recherche 1332 BFP, Institut National de la Recherche Agronomique, Université de Bordeaux, F-33140 Villenave d'Ornon, France (J.P., C.B., J.-P.M., F.W.J.T., C.R.);Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, New York 14853 (L.B.B.M., E.A.F., J.K.C.R.);Laboratoire de Biogénèse Membranaire, Université de Bordeaux, Unité Mixte de Recherche 5200, F-33000 Bordeaux, France (J.J., F.D.); andLaboratoire de Biogénèse Membranaire, Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5200, F-33000 Bordeaux, France (J.J., F.D.).ORCID 0000-0003-1881-9631
Frédéric DomergueUnité Mixte de Recherche 1332 BFP, Institut National de la Recherche Agronomique, Université de Bordeaux, F-33140 Villenave d'Ornon, France (J.P., C.B., J.-P.M., F.W.J.T., C.R.);Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, New York 14853 (L.B.B.M., E.A.F., J.K.C.R.);Laboratoire de Biogénèse Membranaire, Université de Bordeaux, Unité Mixte de Recherche 5200, F-33000 Bordeaux, France (J.J., F.D.); andLaboratoire de Biogénèse Membranaire, Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5200, F-33000 Bordeaux, France (J.J., F.D.).ORCID 0000-0002-0183-7000
Christophe RothanUnité Mixte de Recherche 1332 BFP, Institut National de la Recherche Agronomique, Université de Bordeaux, F-33140 Villenave d'Ornon, France (J.P., C.B., J.-P.M., F.W.J.T., C.R.);Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, New York 14853 (L.B.B.M., E.A.F., J.K.C.R.);Laboratoire de Biogénèse Membranaire, Université de Bordeaux, Unité Mixte de Recherche 5200, F-33000 Bordeaux, France (J.J., F.D.); andLaboratoire de Biogénèse Membranaire, Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5200, F-33000 Bordeaux, France (J.J., F.D.) christophe.rothan@bordeaux.inra.fr.
Université de Bordeaux · FRCornell University · USCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The thick cuticle covering and embedding the epidermal cells of tomato (Solanum lycopersicum) fruit acts not only as a protective barrier against pathogens and water loss but also influences quality traits such as brightness and postharvest shelf-life. In a recent study, we screened a mutant collection of the miniature tomato cultivar Micro-Tom and isolated several glossy fruit mutants in which the abundance of cutin, the polyester component of the cuticle, was strongly reduced. We employed a newly developed mapping-by-sequencing strategy to identify the causal mutation underlying the cutin deficiency in a mutant thereafter named gpat6-a (for glycerol-3-phosphate acyltransferase6). To this end, a backcross population (BC1F2) segregating for the glossy trait was phenotyped. Individuals displaying either a wild-type or a glossy fruit trait were then pooled into bulked populations and submitted to whole-genome sequencing prior to mutation frequency analysis. This revealed that the causal point mutation in the gpat6-a mutant introduces a charged amino acid adjacent to the active site of a GPAT6 enzyme. We further showed that this mutation completely abolished the GPAT activity of the recombinant protein. The gpat6-a mutant showed perturbed pollen formation but, unlike a gpat6 mutant of Arabidopsis (Arabidopsis thaliana), was not male sterile. The most striking phenotype was observed in the mutant fruit, where cuticle thickness, composition, and properties were altered. RNA sequencing analysis highlighted the main processes and pathways that were affected by the mutation at the transcriptional level, which included those associated with lipid, secondary metabolite, and cell wall biosynthesis.

Indexed as

Amino Acid SequenceChromosome MappingFruitGlycerol-3-Phosphate O-AcyltransferaseMembrane LipidsModels, MolecularMutationPhenotypePhylogenyPlant ProteinsPollenRecombinant ProteinsSequence AlignmentSequence Analysis, RNASolanum lycopersicumcutinGlycerol-3-Phosphate O-AcyltransferaseMembrane LipidsPlant ProteinsRecombinant Proteins

Identifiers

PMID27208295
PMCPMC4902622
OpenAlexW2338164714

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.