Evidence map›Paper›PMID 27208285›Full record

ArticlePlant physiology2016

Characterization of a New Pink-Fruited Tomato Mutant Results in the Identification of a Null Allele of the SlMYB12 Transcription Factor.

Josefina-Patricia Fernandez-Moreno, Oren Tzfadia, Javier Forment, Silvia Presa, Ilana Rogachev, Sagit Meir, Diego Orzaez, Aspah Aharoni, Antonio Granell

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
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  6. Review
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  9. Review
  10. Recent Advances in Tomato Gene Editing.International journal of molecular sciences · 2024
    Review
  11. Article
  12. Article
  13. An LcMYB111-LcHY5 Module Differentially Activates anInternational journal of molecular sciences · 2023
    Article
  14. Article
  15. Review
  16. Article
  17. ODORANT1 targets multiple metabolic networks in petunia flowers.The Plant journal : for cell and molecular biology · 2022
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 3 countries.

Josefina-Patricia Fernandez-MorenoInstituto de Biología Molecular y Celular de Plantas (CSIC-UPV), Ciudad Politécnica de la Innovación, Universidad Politécnica de Valencia, CP 46022 Valencia, Spain (J.-P.F.-M., J.F., S.P., D.O., A.G.);VIB/Ghent University, Bioinformatics and Systems Biology, B-9052 Gent, Belgium (O.T.); andDepartment of Plant Sciences and the Environment, Weizmann Institute of Science, Rehovot 76100, Israel (I.R., S.M., A.A.).ORCID 0000-0002-1872-4061
Oren TzfadiaInstituto de Biología Molecular y Celular de Plantas (CSIC-UPV), Ciudad Politécnica de la Innovación, Universidad Politécnica de Valencia, CP 46022 Valencia, Spain (J.-P.F.-M., J.F., S.P., D.O., A.G.);VIB/Ghent University, Bioinformatics and Systems Biology, B-9052 Gent, Belgium (O.T.); andDepartment of Plant Sciences and the Environment, Weizmann Institute of Science, Rehovot 76100, Israel (I.R., S.M., A.A.).ORCID 0000-0002-7096-8063
Javier FormentInstituto de Biología Molecular y Celular de Plantas (CSIC-UPV), Ciudad Politécnica de la Innovación, Universidad Politécnica de Valencia, CP 46022 Valencia, Spain (J.-P.F.-M., J.F., S.P., D.O., A.G.);VIB/Ghent University, Bioinformatics and Systems Biology, B-9052 Gent, Belgium (O.T.); andDepartment of Plant Sciences and the Environment, Weizmann Institute of Science, Rehovot 76100, Israel (I.R., S.M., A.A.).
Silvia PresaInstituto de Biología Molecular y Celular de Plantas (CSIC-UPV), Ciudad Politécnica de la Innovación, Universidad Politécnica de Valencia, CP 46022 Valencia, Spain (J.-P.F.-M., J.F., S.P., D.O., A.G.);VIB/Ghent University, Bioinformatics and Systems Biology, B-9052 Gent, Belgium (O.T.); andDepartment of Plant Sciences and the Environment, Weizmann Institute of Science, Rehovot 76100, Israel (I.R., S.M., A.A.).
Ilana RogachevInstituto de Biología Molecular y Celular de Plantas (CSIC-UPV), Ciudad Politécnica de la Innovación, Universidad Politécnica de Valencia, CP 46022 Valencia, Spain (J.-P.F.-M., J.F., S.P., D.O., A.G.);VIB/Ghent University, Bioinformatics and Systems Biology, B-9052 Gent, Belgium (O.T.); andDepartment of Plant Sciences and the Environment, Weizmann Institute of Science, Rehovot 76100, Israel (I.R., S.M., A.A.).
Sagit MeirInstituto de Biología Molecular y Celular de Plantas (CSIC-UPV), Ciudad Politécnica de la Innovación, Universidad Politécnica de Valencia, CP 46022 Valencia, Spain (J.-P.F.-M., J.F., S.P., D.O., A.G.);VIB/Ghent University, Bioinformatics and Systems Biology, B-9052 Gent, Belgium (O.T.); andDepartment of Plant Sciences and the Environment, Weizmann Institute of Science, Rehovot 76100, Israel (I.R., S.M., A.A.).ORCID 0000-0001-7102-3152
Diego OrzaezInstituto de Biología Molecular y Celular de Plantas (CSIC-UPV), Ciudad Politécnica de la Innovación, Universidad Politécnica de Valencia, CP 46022 Valencia, Spain (J.-P.F.-M., J.F., S.P., D.O., A.G.);VIB/Ghent University, Bioinformatics and Systems Biology, B-9052 Gent, Belgium (O.T.); andDepartment of Plant Sciences and the Environment, Weizmann Institute of Science, Rehovot 76100, Israel (I.R., S.M., A.A.).
Aspah AharoniInstituto de Biología Molecular y Celular de Plantas (CSIC-UPV), Ciudad Politécnica de la Innovación, Universidad Politécnica de Valencia, CP 46022 Valencia, Spain (J.-P.F.-M., J.F., S.P., D.O., A.G.);VIB/Ghent University, Bioinformatics and Systems Biology, B-9052 Gent, Belgium (O.T.); andDepartment of Plant Sciences and the Environment, Weizmann Institute of Science, Rehovot 76100, Israel (I.R., S.M., A.A.) asaph.aharoni@weizmann.ac.il agranell@ibmcp.upv.es.
Antonio GranellInstituto de Biología Molecular y Celular de Plantas (CSIC-UPV), Ciudad Politécnica de la Innovación, Universidad Politécnica de Valencia, CP 46022 Valencia, Spain (J.-P.F.-M., J.F., S.P., D.O., A.G.);VIB/Ghent University, Bioinformatics and Systems Biology, B-9052 Gent, Belgium (O.T.); andDepartment of Plant Sciences and the Environment, Weizmann Institute of Science, Rehovot 76100, Israel (I.R., S.M., A.A.) asaph.aharoni@weizmann.ac.il agranell@ibmcp.upv.es.ORCID 0000-0003-4266-9581
Instituto de Biología Molecular y Celular de Plantas · ESGhent University · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The identification and characterization of new tomato (Solanum lycopersicum) mutants affected in fruit pigmentation and nutritional content can provide valuable insights into the underlying biology, as well as a source of new alleles for breeding programs. To date, all characterized pink-pigmented tomato fruit mutants appear to result from low SlMYB12 transcript levels in the fruit skin. Two new mutant lines displaying a pink fruit phenotype (pf1 and pf2) were characterized in this study. In the pf mutants, SlMYB12 transcripts accumulated to wild-type levels but exhibited the same truncation, which resulted in the absence of the essential MYB activation domain coding region. Allelism and complementation tests revealed that both pf mutants were allelic to the y locus and showed the same recessive null allele in homozygosis: Δy A set of molecular and metabolic effects, reminiscent of those observed in the Arabidopsis (Arabidopsis thaliana) myb11 myb12 myb111 triple mutant, were found in the tomato Δy mutants. To our knowledge, these have not been described previously, and our data support the idea of their being null mutants, in contrast to previously described transcriptional hypomorphic pink fruit lines. We detected a reduction in the expression of several flavonol glycosides and some associated glycosyl transferases. Transcriptome analysis further revealed that the effects of the pf mutations extended beyond the flavonoid pathway into the interface between primary and secondary metabolism. Finally, screening for Myb-binding sites in the candidate gene promoter sequences revealed that 141 of the 152 co-down-regulated genes may be direct targets of SlMYB12 regulation.

Indexed as

AllelesChromatography, LiquidFlavonoidsFlavonolsFruitGene Expression Regulation, PlantGlycosylationMass SpectrometryMetabolomicsMutationPigmentationPlant ProteinsPlants, Genetically ModifiedSequence Analysis, RNASolanum lycopersicumTranscription FactorsFlavonoidsFlavonolsPlant ProteinsTranscription Factors

Identifiers

PMID27208285
PMCPMC4936558
OpenAlexW2347170250

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.