Evidence map›Paper›PMID 27208231›Full record

ArticlePlant physiology2016

The bZIP Protein VIP1 Is Involved in Touch Responses in Arabidopsis Roots.

Daisuke Tsugama, Shenkui Liu, Tetsuo Takano

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
8.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
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  8. RhizogenicProceedings of the National Academy of Sciences of the United States of America · 2023
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  9. Functional annotations of ESTs ofSaudi journal of biological sciences · 2021
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  10. Article
  11. Frontiers in plant science · 2021
    Article
  12. Review
  13. The SoybeanInternational journal of molecular sciences · 2020
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Frontiers in plant science · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Daisuke TsugamaLaboratory of Crop Physiology, Research Faculty of Agriculture, Hokkaido University, Sapporo-shi, Hokkaido 060-8589, Japan (D.T.);Asian Natural Environmental Science Center, University of Tokyo, Nishitokyo-shi, Tokyo 188-0002, Japan (D.T., T.T.); andAlkali Soil Natural Environmental Science Center, Northeast Forestry University, Xiangfang District, Harbin 150040, People's Republic of China (S.L.) tsugama@res.agr.hokudai.ac.jp.ORCID 0000-0002-4946-678X
Shenkui LiuLaboratory of Crop Physiology, Research Faculty of Agriculture, Hokkaido University, Sapporo-shi, Hokkaido 060-8589, Japan (D.T.);Asian Natural Environmental Science Center, University of Tokyo, Nishitokyo-shi, Tokyo 188-0002, Japan (D.T., T.T.); andAlkali Soil Natural Environmental Science Center, Northeast Forestry University, Xiangfang District, Harbin 150040, People's Republic of China (S.L.).
Tetsuo TakanoLaboratory of Crop Physiology, Research Faculty of Agriculture, Hokkaido University, Sapporo-shi, Hokkaido 060-8589, Japan (D.T.);Asian Natural Environmental Science Center, University of Tokyo, Nishitokyo-shi, Tokyo 188-0002, Japan (D.T., T.T.); andAlkali Soil Natural Environmental Science Center, Northeast Forestry University, Xiangfang District, Harbin 150040, People's Republic of China (S.L.).
Hokkaido University · JPHokkaido Agricultural Research Center · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

VIP1 is a bZIP transcription factor in Arabidopsis (Arabidopsis thaliana). VIP1 transiently accumulates in the nucleus when cells are exposed to hypoosmotic conditions, but its physiological relevance is unclear. This is possibly because Arabidopsis has approximately 10 close homologs of VIP1 and they function redundantly. To examine their physiological roles, transgenic plants overexpressing a repression domain-fused form of VIP1 (VIP1-SRDXox plants), in which the gene activation mediated by VIP1 is expected to be repressed, were generated. Because hypoosmotic stress can mimic mechanical stimuli (e.g. touch), the touch-induced root-waving phenotypes and gene expression patterns in those transgenic plants were examined. VIP1-SRDXox plants exhibited more severe root waving and lower expression of putative VIP1 target genes. The expression of the VIP1-green fluorescent protein (GFP) fusion protein partially suppressed the VIP1-SRDX-induced increase in root waving when expressed in the VIP1-SRDXox plants. These results suggest that VIP1 can suppress the touch-induced root waving. The VIP1-SRDX-induced increase in root waving was also suppressed when the synthetic auxin 2,4-dichlorophenoxy acetic acid or the ethylene precursor 1-aminocyclopropane-1-carboxylic acid, which is known to activate auxin biosynthesis, was present in the growth medium. Root cap cells with the auxin marker DR5rev::GFP were more abundant in the VIP1-SRDXox background than in the wild-type background. Auxin is transported via the root cap, and the conditions of outermost root cap layers were abnormal in VIP1-SRDXox plants. These results raise the possibility that VIP1 influences structures of the root cap and thereby regulates the local auxin responses in roots.

Indexed as

TouchArabidopsisArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsDNA, PlantEthylenesGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantGenotypeGreen Fluorescent ProteinsIndoleacetic AcidsOsmosisPlant RootsPlants, Genetically ModifiedProtein BindingProtein TransportArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsDNA, PlantethyleneEthylenesGreen Fluorescent ProteinsIndoleacetic AcidsVIP1 protein, Arabidopsis

Identifiers

PMID27208231
PMCPMC4902608
OpenAlexW2331652004

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.