Evidence map›Paper›PMID 27208170›Full record

ArticleThe Biochemical journal2016

Structural basis of the signalling through a bacterial membrane receptor HasR deciphered by an integrative approach.

Halina Wojtowicz, Ada Prochnicka-Chalufour, Gisele Cardoso de Amorim, Olga Roudenko, Catherine Simenel, Idir Malki, Gérard Pehau-Arnaudet, Francesca Gubellini, Alexandros Koutsioubas, Javier Pérez and 4 more

Open access · hybridAbstract read
In one paragraph

Article in The Biochemical journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.8field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 2 countries.

Halina WojtowiczDépartement de Biologie Structurale et Chimie, Unité de Résonance Magnétique Nucléaire des Biomolécules, Institut Pasteur, Paris, France CNRS, UMR 3528, Paris, France.
Ada Prochnicka-ChalufourDépartement de Biologie Structurale et Chimie, Unité de Résonance Magnétique Nucléaire des Biomolécules, Institut Pasteur, Paris, France CNRS, UMR 3528, Paris, France.
Gisele Cardoso de AmorimDépartement de Biologie Structurale et Chimie, Unité de Résonance Magnétique Nucléaire des Biomolécules, Institut Pasteur, Paris, France CNRS, UMR 3528, Paris, France.
Olga RoudenkoBeamline SWING, Synchrotron SOLEIL, Saint-Aubin, France.
Catherine SimenelDépartement de Biologie Structurale et Chimie, Unité de Résonance Magnétique Nucléaire des Biomolécules, Institut Pasteur, Paris, France CNRS, UMR 3528, Paris, France.
Idir MalkiDépartement de Biologie Structurale et Chimie, Unité de Résonance Magnétique Nucléaire des Biomolécules, Institut Pasteur, Paris, France CNRS, UMR 3528, Paris, France.
Gérard Pehau-ArnaudetCNRS, UMR 3528, Paris, France CITECH, Institut Pasteur, Paris, France.
Francesca GubelliniCNRS, UMR 3528, Paris, France G5 Biologie Structurale de la Sécrétion Bactérienne, Institut Pasteur, Paris, France.
Alexandros KoutsioubasJülich Centre for Neutron Science, Forschungszentrum Jülich GmbH, Outstation at MLZ, Garching, Germany.
Javier PérezBeamline SWING, Synchrotron SOLEIL, Saint-Aubin, France.
Philippe DelepelaireInstitut de Biologie Physico-Chimique, CNRS Université Paris-Diderot, UMR 7099, Paris, France.
Muriel DelepierreDépartement de Biologie Structurale et Chimie, Unité de Résonance Magnétique Nucléaire des Biomolécules, Institut Pasteur, Paris, France CNRS, UMR 3528, Paris, France.
Rémi FronzesDépartement de Biologie Structurale et Chimie, Unité de Résonance Magnétique Nucléaire des Biomolécules, Institut Pasteur, Paris, France CNRS, UMR 3528, Paris, France G5 Biologie Structurale de la Sécrétion Bactérienne, Institut Pasteur, Paris, France.
Nadia Izadi-PruneyreDépartement de Biologie Structurale et Chimie, Unité de Résonance Magnétique Nucléaire des Biomolécules, Institut Pasteur, Paris, France CNRS, UMR 3528, Paris, France nadia.izadi@pasteur.fr.
Centre National de la Recherche Scientifique · FRInstitut Pasteur · FRLaboratoire des Biomolécules · FRSynchrotron soleil · FRForschungszentrum Jülich · DEInstitut de Biologie Physico-Chimique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacteria use diverse signalling pathways to adapt gene expression to external stimuli. In Gram-negative bacteria, the binding of scarce nutrients to membrane transporters triggers a signalling process that up-regulates the expression of genes of various functions, from uptake of nutrient to production of virulence factors. Although proteins involved in this process have been identified, signal transduction through this family of transporters is not well understood. In the present study, using an integrative approach (EM, SAXS, X-ray crystallography and NMR), we have studied the structure of the haem transporter HasR captured in two stages of the signalling process, i.e. before and after the arrival of signalling activators (haem and its carrier protein). We show for the first time that the HasR domain responsible for signal transfer: (i) is highly flexible in two stages of signalling; (ii) extends into the periplasm at approximately 70-90 Å (1 Å=0.1 nm) from the HasR β-barrel; and (iii) exhibits local conformational changes in response to the arrival of signalling activators. These features would favour the signal transfer from HasR to its cytoplasmic membrane partners.

Indexed as

Bacterial ProteinsCrystallography, X-RayHemeMagnetic Resonance SpectroscopyMembrane Transport ProteinsMicroscopy, ElectronProtein BindingSerratia marcescensSignal TransductionBacterial ProteinsHemeMembrane Transport Proteinsbacterial nutrient transporterhaemHasRintegrative approachSerratia marcescenstransmembrane signalling

Identifiers

PMID27208170
PMCPMC4941744
OpenAlexW2364434854

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.