Evidence map›Paper›PMID 27208109›Full record

ArticleApplied and environmental microbiology2016

Analyses of Short-Term Antagonistic Evolution of Pseudomonas aeruginosa Strain PAO1 and Phage KPP22 (Myoviridae Family, PB1-Like Virus Genus).

Jumpei Uchiyama, Masato Suzuki, Koji Nishifuji, Shin-Ichiro Kato, Reina Miyata, Tadahiro Nasukawa, Kotoe Yamaguchi, Iyo Takemura-Uchiyama, Takako Ujihara, Hidekatsu Shimakura and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 30 citations in OpenAlex.

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  13. Bacteriophage Technology and Modern Medicine.Antibiotics (Basel, Switzerland) · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 1 country.

Jumpei UchiyamaSchool of Veterinary Medicine, Azabu University, Kanagawa, Japan uchiyama@azabu-u.ac.jp.
Masato SuzukiDepartment of Bacteriology II, National Institute of Infectious Diseases, Tokyo, Japan.
Koji NishifujiDivision of Animal Life Science, Graduate School, Tokyo University of Agriculture and Technology, Tokyo, Japan.
Shin-Ichiro KatoKochi University, Kochi, Japan.
Reina MiyataKochi University, Kochi, Japan.
Tadahiro NasukawaSchool of Veterinary Medicine, Azabu University, Kanagawa, Japan.
Kotoe YamaguchiKochi University, Kochi, Japan.
Iyo Takemura-UchiyamaSchool of Veterinary Medicine, Azabu University, Kanagawa, Japan.
Takako UjiharaKochi University, Kochi, Japan.
Hidekatsu ShimakuraSchool of Veterinary Medicine, Azabu University, Kanagawa, Japan.
Hironobu MurakamiSchool of Veterinary Medicine, Azabu University, Kanagawa, Japan.
Noriaki OkamotoSchool of Veterinary Medicine, Azabu University, Kanagawa, Japan.
Yoshihiko SakaguchiDepartment of Microbiology, Kitasato University School of Medicine, Kanagawa, Japan.
Keigo ShibayamaDepartment of Bacteriology II, National Institute of Infectious Diseases, Tokyo, Japan.
Masahiro SakaguchiSchool of Veterinary Medicine, Azabu University, Kanagawa, Japan.
Shigenobu MatsuzakiKochi University, Kochi, Japan.
Azabu University · JPKōchi University · JPNational Institute of Infectious Diseases · JPKitasato University · JPTokyo University of Agriculture and Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

unlabelledPseudomonas aeruginosa causes serious intractable infections in humans and animals. Bacteriophage (phage) therapy has been applied to treat P. aeruginosa infections, and phages belonging to the PB1-like virus genus in the Myoviridae family have been used as therapeutic phages. To achieve safer and more effective phage therapy, the use of preadapted phages is proposed. To understand in detail such phage preadaptation, the short-term antagonistic evolution of bacteria and phages should be studied. In this study, the short-term antagonistic evolution of bacteria and PB1-like phage was examined by studying phage-resistant clones of P. aeruginosa strain PAO1 and mutant PB1-like phages that had recovered their infectivity. First, phage KPP22 was isolated and characterized; it was classified as belonging to the PB1-like virus genus in the Myoviridae family. Subsequently, three KPP22-resistant PAO1 clones and three KPP22 mutant phages capable of infecting these clones were isolated in three sets of in vitro experiments. It was shown that the bacterial resistance to phage KPP22 was caused by significant decreases in phage adsorption and that the improved infectivity of KPP22 mutant phages was caused by significant increases in phage adsorption. The KPP22-resistant PAO1 clones and the KPP22 mutant phages were then analyzed genetically. All three KPP22-resistant PAO1 clones, which were deficient for the O5 antigen, had a common nonsense mutation in the wzy gene. All the KPP22 mutant phage genomes showed the same four missense mutations in the open reading frames orf060, orf065, and orf086 The information obtained in this study should be useful for further development of safe and efficient phage therapy. IMPORTANCE: Pseudomonas aeruginosa causes serious intractable infections in humans and animals; bacteriophage (phage) therapy has been utilized to treat P. aeruginosa infections, and phages that belong to the PB1-like virus genus in the family Myoviridae have been used as therapeutic phages. The preadapted phage is trained in advance through the antagonistic evolution of bacteria and phage and is proposed to be used to achieve safer and more effective phage therapy. In this study, to understand the phage preadaptation, the in vitro short-term antagonistic evolution was studied using P. aeruginosa strain PAO1 and the newly isolated PB1-like phage KPP22. Phage KPP22 was characterized, and the molecular framework regarding the phage preadaptation of KPP22 was elucidated. The importance of study of antagonistic evolution of bacteria and phage in phage therapy is discussed.

Indexed as

AntibiosisBiological EvolutionGenome, ViralMyoviridaePseudomonas aeruginosaPseudomonas Phages

Identifiers

PMID27208109
PMCPMC4984277
OpenAlexW2358496713

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.