Evidence map›Paper›PMID 27206715›Full record

ArticleGenetics2016

Complex Haploinsufficiency-Based Genetic Analysis of the NDR/Lats Kinase Cbk1 Provides Insight into Its Multiple Functions in Candida albicans.

Sarah Saputo, Kaitlyn L Norman, Thomas Murante, Brooke N Horton, Jacinto De La Cruz Diaz, Louis DiDone, Jennifer Colquhoun, Jeremy W Schroeder, Lyle A Simmons, Anuj Kumar and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
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  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Sarah SaputoDepartment of Microbiology/Immunology University of Rochester School of Medicine and Dentistry, Rochester, New York 14642.
Kaitlyn L NormanDepartment of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, Michigan 48109.
Thomas MuranteDepartment of Pediatrics, University of Rochester School of Medicine and Dentistry, Rochester, New York 14642.
Brooke N HortonDepartment of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, Michigan 48109.
Jacinto De La Cruz DiazDepartment of Microbiology/Immunology University of Rochester School of Medicine and Dentistry, Rochester, New York 14642.
Louis DiDoneDepartment of Pediatrics, University of Rochester School of Medicine and Dentistry, Rochester, New York 14642.
Jennifer ColquhounDepartment of Microbiology/Immunology University of Rochester School of Medicine and Dentistry, Rochester, New York 14642.
Jeremy W SchroederDepartment of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, Michigan 48109.
Lyle A SimmonsDepartment of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, Michigan 48109.
Anuj KumarDepartment of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, Michigan 48109.
Damian J KrysanDepartment of Microbiology/Immunology University of Rochester School of Medicine and Dentistry, Rochester, New York 14642 Department of Pediatrics, University of Rochester School of Medicine and Dentistry, Rochester, New York 14642 damian_krysan@urmc.rochester.edu.
University of Rochester · USUniversity of Michigan–Ann Arbor · US

Funding

CELLULAR AND MOLECULAR BIOLOGY AT MICHIGANT32GM007315 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PUTHENVEEDU, MANOJKUMAR A · 1985 to 2021
$12.8M
PREDOCTORAL TRAINING IN GENETICST32GM007544 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MORAN, JOHN V. · 1985 to 2022
$11.3M
Training Program in Oral ScienceT90DE021985 · NIDCR · UNIVERSITY OF ROCHESTER · PI OVITT, CATHERINE, YULE, DAVID I · 2011 to 2021
$5.6M
Resource in Education in Microbiology and ImmunologyR25GM064133 · NIGMS · UNIVERSITY OF ROCHESTER · PI LORD, EDITH M · 2002 to 2017
$4.2M
Infection and Immunity: The Pathogenesis of Host-Microbe InteractionsT32AI118689 · NIAID · UNIVERSITY OF ROCHESTER · PI Paul M. Dunman, BRIAN M WARD · 2015 to 2026
$2.5M
Large scale synthetic genetic analysis in Candida albicansR01AI098450 · NIAID · UNIVERSITY OF ROCHESTER · PI KRYSAN, DAMIAN J · 2012 to 2016
$1.9M
Supplement: DNA REPLICATION AND GENOME STABILITYR01GM107312 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SIMMONS, LYLE · 2013 to 2017
$1.5M
NIAID NIH HHS R01 AI098450NIAID NIH HHS T32 AI118689NIDCR NIH HHS T90 DE021985NIGMS NIH HHS R01 GM107312NIGMS NIH HHS R25 GM064133NIGMS NIH HHS T32 GM007315NIGMS NIH HHS T32 GM007544
6 · The paper itself

Abstract

Although the analysis of genetic interactions and networks is a powerful approach to understanding biology, it has not been applied widely to the pathogenic yeast Candida albicans Here, we describe the use of both screening and directed genetic interaction studies based on complex haploinsufficiency to probe the function of the R: egulation of A: ce2 and M: orphogenesis (RAM) pathway in C. albicans A library of 5200 Tn7-mutagenized derivatives of a parental strain heterozygous at CBK1, the key kinase in the RAM pathway, was screened for alterations in serum-induced filamentation. Following confirmation of phenotypes and identification of insertion sites by sequencing, a set of 36 unique double heterozygous strains showing complex haploinsufficiency was obtained. In addition to a large set of genes regulated by the RAM transcription factor Ace2, genes related to cell wall biosynthesis, cell cycle, polarity, oxidative stress, and nitrogen utilization were identified. Follow-up analysis led to the first demonstration that the RAM pathway is required for oxidative stress tolerance in a manner related to the two-component-regulated kinase Chk1 and revealed a potential direct connection between the RAM pathway and the essential Mps1 spindle pole-related kinase. In addition, genetic interactions with CDC42-related genes MSB1, a putative scaffold protein, and RGD3, a putative Rho GTPase-activating protein (GAP) were identified. We also provide evidence that Rgd3 is a GAP for Cdc42 and show that its localization and phosphorylation are dependent on Cbk1.

Indexed as

Angiotensin-Converting Enzyme 2Candida albicanscdc42 GTP-Binding ProteinCell DivisionCell WallCheckpoint Kinase 1Fungal ProteinsGene Expression Regulation, FungalHaploinsufficiencyIntracellular Signaling Peptides and ProteinsPeptidyl-Dipeptidase APhosphorylationProtein Serine-Threonine KinasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSignal TransductionAngiotensin-Converting Enzyme 2CBK1 protein, S cerevisiaecdc42 GTP-Binding ProteinCheckpoint Kinase 1Fungal ProteinsIntracellular Signaling Peptides and ProteinsPeptidyl-Dipeptidase AProtein Serine-Threonine KinasesSaccharomyces cerevisiae ProteinsC. albicanscomplex haploinsufficiencyfungal morphogenesisRAM pathway

Identifiers

PMID27206715
PMCPMC4937472
OpenAlexW2398634343

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.