Evidence map›Paper›PMID 27206545›Full record

ArticleNature communications2015

ChIP-seq reveals broad roles of SARD1 and CBP60g in regulating plant immunity.

Tongjun Sun, Yaxi Zhang, Yan Li, Qian Zhang, Yuli Ding, Yuelin Zhang

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 111 papers.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed
19.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed, 279 citations in OpenAlex.

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51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Tongjun SunDepartment of Botany, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4.
Yaxi ZhangNational Institute of Biological Sciences, Beijing, 102206, China.
Yan LiNational Institute of Biological Sciences, Beijing, 102206, China.
Qian ZhangDepartment of Botany, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4.
Yuli DingDepartment of Botany, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4.
Yuelin ZhangDepartment of Botany, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4.
University of British Columbia · CANational Institute of Biological Sciences, Beijing · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recognition of pathogens by host plants leads to rapid transcriptional reprogramming and activation of defence responses. The expression of many defence regulators is induced in this process, but the mechanisms of how they are controlled transcriptionally are largely unknown. Here we use chromatin immunoprecipitation sequencing to show that the transcription factors SARD1 and CBP60g bind to the promoter regions of a large number of genes encoding key regulators of plant immunity. Among them are positive regulators of systemic immunity and signalling components for effector-triggered immunity and PAMP-triggered immunity, which is consistent with the critical roles of SARD1 and CBP60g in these processes. In addition, SARD1 and CBP60g target a number of genes encoding negative regulators of plant immunity, suggesting that they are also involved in negative feedback regulation of defence responses. Based on these findings we propose that SARD1 and CBP60g function as master regulators of plant immune responses.

Indexed as

Gene Expression Regulation, PlantArabidopsisArabidopsis ProteinsBase SequenceBinding SitesCalmodulin-Binding ProteinsChromatin ImmunoprecipitationFeedback, PhysiologicalHigh-Throughput Nucleotide SequencingMutationPlant DiseasesPlant ImmunityPromoter Regions, GeneticProtein BindingPseudomonas syringaeSignal TransductionArabidopsis ProteinsCalmodulin-Binding ProteinsCBP60g protein, ArabidopsisSARD1 protein, Arabidopsis

Identifiers

PMID27206545
PMCPMC4703862
OpenAlexW2272047407

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.